G213521


Basic Information

Item Value
gene id G213521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 3441930 ~ 3443093 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU289843
GCTGCAGAGTGGAGGAAGGGAGAGAGGCTCACTTATTGTGCCTCGTGAAACTTTGCCAGTTACCCGCTCCGGTAATCTTCAGGTGGAGGTAGAACCTGGTGTCCATGTGCCCTGGGGTGGTGTGTGAAAACCCTGGATAGGATTCGgccagttttttttgttgggtgAAATGGATTGGATGATCTTCCCGAACACTCCTCGTGTCGTTCAGCTGCACACGGCCGGTGCAGTGCGCGGTGCTAGGATGGCGAGCCAAGCCCGAGGACCCAGGTCATTACACTACATTCACATTTTTCAAACACTTGATATTGAACATTAAAGAAAATTTGTGGACTTTTGAATTTTTGGAGTAAAAGGacactattttattttgtttattttttgaaagaaataaGACATTCCTTGAACTATTTGAATACAAAGACACTGAAAAGGGTTAAACTTTAATTGGTTGGATACTGTTATTTAATTTTGATAATTTCTAAGTGGTTTTGAtatacatttattgtttttgctacagagaattgttatttttttatttttgggtgTTCGTTAAAGGGTGAACTATTGGTGTGAAATAACCTAGAGGTTTAAGTGAATAACACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289843 True 607 lncRNA 0.40 2 3441930 3443093

Neighbor

gene id symbol gene type direction distance location
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding upstream 870 3376851 ~ 3441060 (+)
znf827 znf827 coding upstream 544401 2723598 ~ 2897529 (+)
prmt9 prmt9 coding upstream 1319479 2099490 ~ 2122451 (+)
nr3c2 nr3c2,LOC107598757 coding upstream 1541836 1690077 ~ 1900094 (+)
tnip2 NA coding upstream 2067079 1365801 ~ 1374851 (+)
LOC103022278 NA coding downstream 11855 3454948 ~ 3475096 (+)
LOC103021981 NA coding downstream 36391 3479484 ~ 3499830 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding downstream 197460 3640553 ~ 3661294 (+)
rnf150 rnf150,LOC107746087,LOC107729769,LOC107700883 coding downstream 988402 4431495 ~ 4484033 (+)
ucp1 ucp1,LOC107703842,LOC107700810 coding downstream 1157373 4600466 ~ 4609805 (+)
G213437 NA non-coding upstream 57057 3358270 ~ 3384873 (+)
G213440 NA non-coding upstream 141053 3299377 ~ 3300877 (+)
G213435 NA non-coding upstream 210555 3231017 ~ 3231375 (+)
G213434 NA non-coding upstream 216559 3225148 ~ 3225371 (+)
G213433 hhip non-coding upstream 249467 3191688 ~ 3192463 (+)
G213551 NA non-coding downstream 180601 3623694 ~ 3688092 (+)
G213556 NA non-coding downstream 250978 3694071 ~ 3694372 (+)
G213594 NA non-coding downstream 302426 3745519 ~ 3745724 (+)
G213596 NA non-coding downstream 334101 3777194 ~ 3777472 (+)
G213609 NA non-coding downstream 486513 3929606 ~ 3936741 (+)
LOC103044168 NA other upstream 83736 3293928 ~ 3358194 (+)
LOC103042715 NA other upstream 2090534 1340751 ~ 1351396 (+)
scrg1 NA other upstream 2930371 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 3192199 229235 ~ 249731 (+)
G213555 NA other downstream 245476 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 457149 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 955492 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 1067846 4510939 ~ 4590452 (+)
G213891 NA other downstream 1729976 5173069 ~ 5174096 (+)

Expression


Co-expression Network