rnf150 (rnf150,LOC107746087,LOC107729769,LOC107700883)


Basic Information

Item Value
gene id rnf150
gene name rnf150,LOC107746087,LOC107729769,LOC107700883
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 4431495 ~ 4484033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253700.3
TCGATTCACAAGAGCCGAGAGATTCGCGTCTGTAGCAGCTGAgccacaataacacacacagagacaccgTGGGTCGAGAGATCAGTGGTGGGATGAGCTTCTGGGTTTAGGATATTTTGCGTTTATTtcgtgtttgtttgtttattttgagttaGAAGTAGTTTGAGAGCTTGGTTTAAGGTCAGATCAGTGAATCAGACAGTTTGGAAGTGAAGCTTTTATTCCCTCCGCGGAGCTTCGGGCAGTGAGGGCGGGCAGGCTGAGTTAGTAAGCCGGACTAGGGGTGATCCGTCGGCGGCTGGAGCAGCATGGCCGTGTCGCTGGTGAAAGCGTGCCGCAGCCTGGCTCTGTCGACGGGGCTTCTGTCCTTCTGCTTTGTCCACCTGCTGTGCCTGGACTTCACTGTGGCCGAGAAGGAGGAGTGGTACACGGCTTTTGTAAACATCACCTACGTGGACCCGGTGACCTCCGAGCTCCGGACGGAGAAGACCGAGTGCGGGCGGTACGGCGAGCATTCCCCTAAGCGGGAGGCCCGGGGCACCGTGCTGCTGCCCGCCAGCGGACACGACCGGCAGGCCTGCGACAGCGGCACCAGGTTCCCCGTCAGCCGGGAGCACCAGGGCCCCTGGATCGCGCTTATAGCCCGGGGGAACTGCACGTACCGGGAGAAGATCCGGCTGGCAGCGAGCCTTAACGCCTCGGCTGTGGTCATCTTCAACGTGGGCTCCAGCAACTCCAACGAGACCATAACCATGCCTCACCAAGGAACGGGAGACATAGTGGCCATCATGATCCCTGAGCCGAAAGGGCGGGAGATTGCGGCCCTGCTGGAGAAGAACGTGAGCGTGATCATGCACATCACTATAGGCACACGCAACCTGCAGAAGTACGTGAGCCGCACCTCCGTGGTCTTCGTCTCCATCTCCTTCATCGTCCTCATGATCATCTCACTGGCCTGGCTCGTCTTCTACTACATCCAGCGGTTCCGCTACGCTAGCGCACGAGATCGCAACcagAGACGACTAGGAGATGCTGCAAAGAAAGCAATCAGCAAGCTGCAAGTGCGGACCATCAGGAAGGGGGACAAGGAAACAGAGTCAGAATTTGACAACTGTGCTGTGTGCATCGAGACCTACAAGCCCAACGATGTAGTGAGGATACTGCCGTGCCGGCATGTTTTCCATAAGAACTGTGTGGATCCGTGGCTGCAGGACCACAGGACCTGTCCCATGTGCAAGATGAACATTCTCAAAGCTCTCGGCATCCCGCCGAACGCAGACTGCTCTGATGACATTCCCCCCGACTACGAGCTGTCCCTGAGCAGCCCTCCCACTAACCCTGTGACGGGGGCCAGTGAGGTGACGATCAGCGAGAGCTCTGTGGTGCTGGACCCTGCTGTCAGGACCGTCGGCCTGTCGCACATCTACCCGGATCCCGATTCCCTCACACAGCTCGCAGAGGGGCGACACATCGCCAGCAGTGAGCACCAGCCGCCTCTAAGCAGCGAATCGGACACTTCGCTCATCTACCCGGTGGAAGTGAGTCTGTCTGACGTGGAGCTTTCTGCTGAAGCTGGTCAGGAGGAACATGAGAAGTCCTGAGTGGAGAGTCTGCTCACTGCACACTGAGCTCACTGAGCTCGAGAGGGGGTTCCTGTGGAGCCGTGTGAGGAGTCGGACCATGACGGTGTGGAAAATAGAATGGAAATAGGAAAAAGAACATAAGCAATATAGAATCAACAACCAATTCTGCAGCCTCCTTTATCGTCCCCGTGCCCCCATCAGCATcaacatcagcatcagcatcagcacagTGCTGGTGGAGATTCcttcaccaaaaaaaacaaagcatacAATCAAACGgcttctctttcctctctctttctatttctctctctctctctctgtggccaCAGTCACACCAGGTTGGTTTTGTCTTCTCTACTAGTTTTACAGAAActgatgcagaaaaaaaaagcacacagaTCTGTACCAGATCAGCTCCACGGACTCTGTGGAAATGGAAATGTTGACCTAATGATGACTGAATTAATTTCCTTGTGGGATCACTGCCAGCATTCGCATAATATTCCAGACTTAAAACCTAAATAATCTATATATACTGAGATGTATAGATGTGAAAAACTTACTGCAAACtgctgcagcaaaaaaaaa

Function

symbol description
rnf150 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: RING finger protein 150

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253700.3 True 2174 mRNA 0.54 7 4431495 4484033

Neighbor

gene id symbol gene type direction distance location
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 770201 3640553 ~ 3661294 (+)
LOC103021981 NA coding upstream 931665 3479484 ~ 3499830 (+)
LOC103022278 NA coding upstream 956399 3454948 ~ 3475096 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding upstream 990435 3376851 ~ 3441060 (+)
znf827 znf827 coding upstream 1533966 2723598 ~ 2897529 (+)
ucp1 ucp1,LOC107703842,LOC107700810 coding downstream 116433 4600466 ~ 4609805 (+)
LOC103038807 LOC108440741,LOC108262861 coding downstream 143415 4627448 ~ 4644929 (+)
LOC103047605 NA coding downstream 179317 4663350 ~ 4731385 (+)
fam13a fam13a coding downstream 253220 4737253 ~ 4864811 (+)
LOC103040043 NA coding downstream 483931 4967964 ~ 4978603 (+)
LOC111195945 NA non-coding upstream 22982 4407413 ~ 4408513 (+)
G213694 NA non-coding upstream 67198 4363884 ~ 4364297 (+)
G213640 NA non-coding upstream 184062 4246745 ~ 4247433 (+)
G213639 NA non-coding upstream 187069 4244074 ~ 4244426 (+)
G213622 NA non-coding upstream 395707 4029916 ~ 4035788 (+)
G213721 NA non-coding downstream 7045 4491078 ~ 4492401 (+)
G213752 NA non-coding downstream 369075 4853108 ~ 4857839 (+)
G213748 NA non-coding downstream 388006 4872039 ~ 4877873 (+)
G213776 NA non-coding downstream 544975 5029008 ~ 5032933 (+)
G213780 NA non-coding downstream 564015 5048048 ~ 5049127 (+)
G213715 znf330 other upstream 2533 4398585 ~ 4428962 (+)
inpp4b inpp4b,LOC107657998 other upstream 64350 3900242 ~ 4367145 (+)
G213555 NA other upstream 742503 3688569 ~ 3688992 (+)
LOC103044168 NA other upstream 1073301 3293928 ~ 3358194 (+)
LOC103042715 NA other upstream 3080099 1340751 ~ 1351396 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 26906 4510939 ~ 4590452 (+)
G213891 NA other downstream 689036 5173069 ~ 5174096 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other downstream 865134 5349167 ~ 5359732 (+)
G214006 NA other downstream 1037151 5521184 ~ 5521675 (+)
G214175 NA other downstream 1799748 6283781 ~ 6284368 (+)

Expression


Co-expression Network