smarca5 (smarca5,LOC107703846,LOC107594298,LOC107757072)


Basic Information

Item Value
gene id smarca5
gene name smarca5,LOC107703846,LOC107594298,LOC107757072
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 3640553 ~ 3661294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684485.1
TTGCGCGGCCCACACGAGTGCGGGAACAGCGGCAACAAAAAAACGAGAAGCCGGTTGATCTGCTCCGGTTCTGAACCGCGAACCCGAACTTTTTAGCTGGATATCTTGTCGGTACCGACTCTGCTGTGAGTCCGGGGCGTGTGGAGGTGCGGGATCGGGAGTCTGCGGAGGTTCTGTGTCGAAATAATCGTGTGATCATGTCTGATAAAGAGGGCGGCGTGGAGCCACCGCGGGAAGAGGAGCGCGGGGGACCCAGCGAGCCGGGACCGGCGGAGGATGGCACCTCTGACGCTGGCCATGATGAAGCATCGGAAACAGCGCAGGAAAGTGGAGACCAGTCATCCTCTCCTGCGGATGAAAGTGCAAATATGGAGCAGCCATCAGGCTATGAAGAGAAAGTGAAAACAGACCGCACCAACAGATTTGAGTACCTGCTGAAGCAGACTGAAGTGTTTGCCCACTTCATCCAGCCTGCTGCCCAGAAAACTCCTACCTCTCCTCTGAAGATGAAGCCTGGCCGCCCTCGTATTAAAAAGGATGAGAAACAGAATCTCCTTTCTGCTGGAGATAATCGTCACCGTCGCACTGAGcaagaggaggatgaggagctGCTCAGTGAAAACAGCAAAGCATCCAATGTGTGCACACGCTTTGATGACTCGCCGTCCTATGTGAAAACTGGCAAACTGAGAGACTATCAGGTCCGTGGTCTGAACTGGCTGATTTCTCTCTATGAGAATGGAATCAACGGCATCCTCGCTGATGAAATGGGTTTGGGAAAGACTCTTCAAACCATTTCTCTGCTGGGCTACATGAAGCACTACAGGAACATCCCTGGGCCTCACATGGTCTTGGTGCCCAAATCCACCCTCTATAACTGGATGAATGAATTTAAGCGCTGGGTGCCTTCCCTCCGAGCGGTCTGCCTCATTGGAGACAGggatgagagaacAGCGTTTATCCGTGACACTTTGTTGCCGGGAGAGTGGGACGTGTGTGTCACTTCCTACGAGATGCTCATCATCGAGAGGGCCGTCTTTAAGAAGTTTAACTGGAGATACCTGGTTATTGACGAGGCCCATCGTATTAAGAATGAGAAATCTAAGCTCTCAGAGATTGTGCGAGAGTTTAAGACCACCAACCGGCTGCTGCTGACAGGAACCCCGCTGCAGAACAACCTGCACGAGCTGTGGGCCCTGCTGAACTTTCTTCTACCTGATGTCTTTAACTCTTCTGAGGACTTCGATTCCTGGTTTGACACTAATAACTGTCTTGGAGACACGAAACTGGTTGAGCGTCTACACACTGTATTGCGTCCATTCCTGCTGAGGCGTATCAAAGCTGACGTGGAGAAATCTCTCCTTCCAAAGAAAGAGATCAAGATGTACATTGGGCTCAGCAAGATGCAGAGAGAATGgtaCACAAAGATCCTGATGAAGGACATTGACATCCTGAACTCTGCGGGGAAGATGGATAAGATGCGTCTGCTGAACGTGCTGATGCAGCTGAGGAAGTGCTGCAATCACCCGTATCTGTTCGATGGTGCCGAGCCCGGTCCTCCGTACACCACCGACCTCCATCTGGTCGTCAACAGCGGCAAGATGGCCGTCCTGGACAAGCTGCTGCCCAAGCTGAACGAGCAAGGGTCTCGTGTGCTGATCTTCAGCCAGATGACCAGGGTGCTGGACATTCTGGAAGACTACTGCATGTGGCGTAACTATGGCTACTGTCGGCTAGACGGGCAGACTCCACACGAGGAGAGACAGATCTCAATAAATGCCTTCAATGAGCCCAACAGCTCCAAGTTTATCTTCATGCTGAGCACCAGGGCCGGAGGCCTGGGTATTAACCTGGCCACAGCCGACGTGGTCATCATTTATGACTCCGACTGGAATCCTCAAGTGGACCTGCAGGCCATGGATCGTGCTCACAGGATTGGTCAGAAAAAGCAGGTGCGTGTCTTCCGTTTCATCACAGAAAATACAGTGGAGGAGAGAATTGTGGAACGTGCCGAAATGAAGCTTCGTTTAGACTCCATAGTCATCCAGCAAGGTAGATTAGTCGACCCCAACATGAACAAGCTAGGAAAAGACGAGATGTTGTCCATCATTCGGCATGGTGCCACTCACGTCTTTGCCTCCAAGGAGAGTGAAATCACTGATGAAGACATTGATGCTATcctggagagaggagagaagaagACCATGGAGATGAAAGAGAAGCTGTCCAACCTTGGGGAGAGCTCTCTGAGGAATTTCACCATGGACACAGAGAACAGTGTGTACAACTTTGAAGGTGAAGAttacagagagaagaaaaaggTTATCACAAACTGGATTGAACCTCCCAAGAGAGAGCGCAAGGCAAACTACGCTGTTGATGCTTATTTCCGGGAGGCCCTGAGAGTCAGTGAGCCAAAGGCACCAAAGGCCCCTCGTCCCCCGAAACAGCCCAACGTTCAAGACTTTCAGTTCTTCCCTCCTCGACTTTTTGAGCTGCTAGAGAAAGAGATTTTGTATTACAGGAAAACTATTGGCTACAAGGTGCCCAGGAACCCTGAACTGCCTAACTCGGCACAGGTGCAGAAGGAGGAGCAGGCTAAGATTGATGAGGCTGAGCCTCTGAATGAGGAAGAgctggaggagaaggagaatCTCCTCTCCCAGGGCTTCACTATTTGGAACAAGCGAGACTTCAATCAGTTCATCAAGGCGAATGAGAAATGGGGCCGAGATGATATTGAGAACATTGCCCGTGAAGTGGAAGGCAAAACACCAGAGGAGGTCATGGAGTATTCTGctgTGTTCTGGGAGCGCTGCAATGAACTGCAGGACATTGAGAAGATCATGGCACAGATTGAGAGAGGGGAGGCCAGGATTCAGAGGAGGATAAGCATTAAGAAAGCGCTGGACTCAAAGATTGGCCGTTACAAAGCACCATTCCACCAGCTGAGGATTTCCTACGGGACCAACAAGGGAAAGAACTACACTGAAGAGGAGGATCGCTTCCTTATCTGCATGTTGCACAAACTGGGCTTCGACAAGGAGAGCGTTTACGATGAGCTGCGCCAGTGCATCCGTAACTCACCCCAGTTCCGCTTCGACTGGTTCCTCAAGTCCCGCACTGCTATGGAGCTACAGAGGAGGTGTAACACACTCATCACCCTCATTGAACGTGAAAACATGGAGCTGGAGGAGAGGGAGAAGGCTGAGAAGAAGAAGCGGGGACCTCGCACTTCTTCAGCTCAGAAACGCAAGCAGGATGTAACACACTCATCACCCTCATTGAACGTGAAAACATGGAGCTGGAGGAGAGGGAGAAGGCTGAGAAGAAGAAGCGGGGACCTCGCACTTCTTCAGCTCAGAAACGCAAGCAGGATGGAACCCCAGACGGGCGTGGTCGTAAGAAGAAGCTGAAGTTATAGTCGGACTTGAACAGCCTCTGATGGACGAGCTTCAGTAGAGCGATACATGCGTTTGTGTTACGGGTCCCGCTCATGTACTGTACCGGCTTTCGTCACAGTAGCTTGTCCTTTTTTAGAAAGGCATAATATTGTAAATTAGGTCTGTCTTTTAGTTACACCACGTACTACGGCtgtgctgttttcttttttttttaatcccttttttgTATCTGTAATTTGTGAgttaataagaaatgtatttatgccTGTTGGATATGTACCACATTCCATTTGCTTGTTTCAAAAtaaattcctttttttgtttcgtttttatttttatttttttttttttattaagattcCCCAGTATTGTATAAGTACCTACCATGAAATAGTCCTTTGGAACACACGTCTCCTAATAAATGCCTTTTTGTTTTGTAA
>XM_022684486.1
TTGCGCGGCCCACACGAGTGCGGGAACAGCGGCAACAAAAAAACGAGAAGCCGGTTGATCTGCTCCGGTTCTGAACCGCGAACCCGAACTTTTTAGCTGGATATCTTGTCGGTACCGACTCTGCTGTGAGTCCGGGGCGTGTGGAGGTGCGGGATCGGGAGTCTGCGGAGGTTCTGTGTCGAAATAATCGTGTGATCATGTCTGATAAAGAGGGCGGCGTGGAGCCACCGCGGGAAGAGGAGCGCGGGGGACCCAGCGAGCCGGGACCGGCGGAGGATGGCACCTCTGACGCTGGCCATGATGAAGCATCGGAAACAGCGCAGGAAAGTGGAGACCAGTCATCCTCTCCTGCGGATGAAAGTGCAAATATGGAGCAGCCATCAGGCTATGAAGAGAAAGTGAAAACAGACCGCACCAACAGATTTGAGTACCTGCTGAAGCAGACTGAAGTGTTTGCCCACTTCATCCAGCCTGCTGCCCAGAAAACTCCTACCTCTCCTCTGAAGATGAAGCCTGGCCGCCCTCGTATTAAAAAGGATGAGAAACAGAATCTCCTTTCTGCTGGAGATAATCGTCACCGTCGCACTGAGcaagaggaggatgaggagctGCTCAGTGAAAACAGCAAAGCATCCAATGTGTGCACACGCTTTGATGACTCGCCGTCCTATGTGAAAACTGGCAAACTGAGAGACTATCAGGTCCGTGGTCTGAACTGGCTGATTTCTCTCTATGAGAATGGAATCAACGGCATCCTCGCTGATGAAATGGGTTTGGGAAAGACTCTTCAAACCATTTCTCTGCTGGGCTACATGAAGCACTACAGGAACATCCCTGGGCCTCACATGGTCTTGGTGCCCAAATCCACCCTCTATAACTGGATGAATGAATTTAAGCGCTGGGTGCCTTCCCTCCGAGCGGTCTGCCTCATTGGAGACAGggatgagagaacAGCGTTTATCCGTGACACTTTGTTGCCGGGAGAGTGGGACGTGTGTGTCACTTCCTACGAGATGCTCATCATCGAGAGGGCCGTCTTTAAGAAGTTTAACTGGAGATACCTGGTTATTGACGAGGCCCATCGTATTAAGAATGAGAAATCTAAGCTCTCAGAGATTGTGCGAGAGTTTAAGACCACCAACCGGCTGCTGCTGACAGGAACCCCGCTGCAGAACAACCTGCACGAGCTGTGGGCCCTGCTGAACTTTCTTCTACCTGATGTCTTTAACTCTTCTGAGGACTTCGATTCCTGGTTTGACACTAATAACTGTCTTGGAGACACGAAACTGGTTGAGCGTCTACACACTGTATTGCGTCCATTCCTGCTGAGGCGTATCAAAGCTGACGTGGAGAAATCTCTCCTTCCAAAGAAAGAGATCAAGATGTACATTGGGCTCAGCAAGATGCAGAGAGAATGgtaCACAAAGATCCTGATGAAGGACATTGACATCCTGAACTCTGCGGGGAAGATGGATAAGATGCGTCTGCTGAACGTGCTGATGCAGCTGAGGAAGTGCTGCAATCACCCGTATCTGTTCGATGGTGCCGAGCCCGGTCCTCCGTACACCACCGACCTCCATCTGGTCGTCAACAGCGGCAAGATGGCCGTCCTGGACAAGCTGCTGCCCAAGCTGAACGAGCAAGGGTCTCGTGTGCTGATCTTCAGCCAGATGACCAGGGTGCTGGACATTCTGGAAGACTACTGCATGTGGCGTAACTATGGCTACTGTCGGCTAGACGGGCAGACTCCACACGAGGAGAGACAGATCTCAATAAATGCCTTCAATGAGCCCAACAGCTCCAAGTTTATCTTCATGCTGAGCACCAGGGCCGGAGGCCTGGGTATTAACCTGGCCACAGCCGACGTGGTCATCATTTATGACTCCGACTGGAATCCTCAAGTGGACCTGCAGGCCATGGATCGTGCTCACAGGATTGGTCAGAAAAAGCAGGTGCGTGTCTTCCGTTTCATCACAGAAAATACAGTGGAGGAGAGAATTGTGGAACGTGCCGAAATGAAGCTTCGTTTAGACTCCATAGTCATCCAGCAAGGTAGATTAGTCGACCCCAACATGAACAAGCTAGGAAAAGACGAGATGTTGTCCATCATTCGGCATGGTGCCACTCACGTCTTTGCCTCCAAGGAGAGTGAAATCACTGATGAAGACATTGATGCTATcctggagagaggagagaagaagACCATGGAGATGAAAGAGAAGCTGTCCAACCTTGGGGAGAGCTCTCTGAGGAATTTCACCATGGACACAGAGAACAGTGTGTACAACTTTGAAGGTGAAGAttacagagagaagaaaaaggTTATCACAAACTGGATTGAACCTCCCAAGAGAGAGCGCAAGGCAAACTACGCTGTTGATGCTTATTTCCGGGAGGCCCTGAGAGTCAGTGAGCCAAAGGCACCAAAGGCCCCTCGTCCCCCGAAACAGCCCAACGTTCAAGACTTTCAGTTCTTCCCTCCTCGACTTTTTGAGCTGCTAGAGAAAGAGATTTTGTATTACAGGAAAACTATTGGCTACAAGGTGCCCAGGAACCCTGAACTGCCTAACTCGGCACAGGTGCAGAAGGAGGAGCAGGCTAAGATTGATGAGGCTGAGCCTCTGAATGAGGAAGAgctggaggagaaggagaatCTCCTCTCCCAGGGCTTCACTATTTGGAACAAGCGAGACTTCAATCAGTTCATCAAGGCGAATGAGAAATGGGGCCGAGATGATATTGAGAACATTGCCCGTGAAGTGGAAGGCAAAACACCAGAGGAGGTCATGGAGTATTCTGctgTGTTCTGGGAGCGCTGCAATGAACTGCAGGACATTGAGAAGATCATGGCACAGATTGAGAGAGGGGAGGCCAGGATTCAGAGGAGGATAAGCATTAAGAAAGCGCTGGACTCAAAGATTGGCCGTTACAAAGCACCATTCCACCAGCTGAGGATTTCCTACGGGACCAACAAGGGAAAGAACTACACTGAAGAGGAGGATCGCTTCCTTATCTGCATGTTGCACAAACTGGGCTTCGACAAGGAGAGCGTTTACGATGAGCTGCGCCAGTGCATCCGTAACTCACCCCAGTTCCGCTTCGACTGGTTCCTCAAGTCCCGCACTGCTATGGAGCTACAGAGGAGGTGTAACACACTCATCACCCTCATTGAACGTGAAAACATGGAGCTGGAGGAGAGGGAGAAGGCTGAGAAGAAGAAGCGGGGACCTCGCACTTCTTCAGCTCAGAAACGCAAGCAGGATGGAACCCCAGACGGGCGTGGTCGTAAGAAGAAGCTGAAGTTATAGTCGGACTTGAACAGCCTCTGATGGACGAGCTTCAGTAGAGCGATACATGCGTTTGTGTTACGGGTCCCGCTCATGTACTGTACCGGCTTTCGTCACAGTAGCTTGTCCTTTTTTAGAAAGGCATAATATTGTAAATTAGGTCTGTCTTTTAGTTACACCACGTACTACGGCtgtgctgttttcttttttttttaatcccttttttgTATCTGTAATTTGTGAgttaataagaaatgtatttatgccTGTTGGATATGTACCACATTCCATTTGCTTGTTTCAAAAtaaattcctttttttgtttcgtttttatttttatttttttttttttattaagattcCCCAGTATTGTATAAGTACCTACCATGAAATAGTCCTTTGGAACACACGTCTCCTAATAAATGCCTTTTTGTTTTGTAA

Function

symbol description
smarca5 Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within cardiac ventricle development and retina development in camera-type eye. Predicted to be active in nucleus. Orthologous to human SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5).

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684485.1 True 3844 mRNA 0.49 25 3640553 3661294
XM_022684486.1 False 3728 mRNA 0.49 24 3640553 3661294

Neighbor

gene id symbol gene type direction distance location
LOC103021981 NA coding upstream 140723 3479484 ~ 3499830 (+)
LOC103022278 NA coding upstream 165457 3454948 ~ 3475096 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding upstream 199493 3376851 ~ 3441060 (+)
znf827 znf827 coding upstream 743024 2723598 ~ 2897529 (+)
prmt9 prmt9 coding upstream 1518102 2099490 ~ 2122451 (+)
rnf150 rnf150,LOC107746087,LOC107729769,LOC107700883 coding downstream 770201 4431495 ~ 4484033 (+)
ucp1 ucp1,LOC107703842,LOC107700810 coding downstream 939172 4600466 ~ 4609805 (+)
LOC103038807 LOC108440741,LOC108262861 coding downstream 966154 4627448 ~ 4644929 (+)
LOC103047605 NA coding downstream 1002056 4663350 ~ 4731385 (+)
fam13a fam13a coding downstream 1075959 4737253 ~ 4864811 (+)
G213521 NA non-coding upstream 197460 3441930 ~ 3443093 (+)
G213437 NA non-coding upstream 255680 3358270 ~ 3384873 (+)
G213440 NA non-coding upstream 339676 3299377 ~ 3300877 (+)
G213435 NA non-coding upstream 409178 3231017 ~ 3231375 (+)
G213434 NA non-coding upstream 415182 3225148 ~ 3225371 (+)
G213556 NA non-coding downstream 32777 3694071 ~ 3694372 (+)
G213594 NA non-coding downstream 84225 3745519 ~ 3745724 (+)
G213596 NA non-coding downstream 115900 3777194 ~ 3777472 (+)
G213609 NA non-coding downstream 268312 3929606 ~ 3936741 (+)
G213622 NA non-coding downstream 368622 4029916 ~ 4035788 (+)
LOC103044168 NA other upstream 282359 3293928 ~ 3358194 (+)
LOC103042715 NA other upstream 2289157 1340751 ~ 1351396 (+)
scrg1 NA other upstream 3128994 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 3390822 229235 ~ 249731 (+)
G213555 NA other downstream 27275 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 238948 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 737291 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 849645 4510939 ~ 4590452 (+)
G213891 NA other downstream 1511775 5173069 ~ 5174096 (+)

Expression


Co-expression Network