scrg1


Basic Information

Item Value
gene id scrg1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 506101 ~ 511559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU289085
GTCCGATCTGCTGGTGCCGCCCCCCCGGCCCGTGGGAGAGAGATGGTGCTGTCAGAAAGGAGAGATATAAGGAGCTCAGTGTGTAAATCTTTACTTTAGATGAGTCTAACCGAGACATTCACCCACAGCCCAGCAGCTCGTACAggaaaacacactcacactcagGATAATAAAGATGAAAGCGGTACTTCTGGTGGCCGTTCTCCTGCTCGGGCTGCAGGCCGGAGATGCTGTTCCCTCCAGTCGCTGGTCCTGTTATAAAAAGGTTCTGAAGGACAGGAACTGTCACAGCATCGGTTTTGGACTTGGGTCCATGAGACCCATTGGATCCCTAGAGAATCATTTCTGGGAGGGGAACAGCTGTGACATGGTCTGCTACTGTAACTTCAGTGAGCTGCTCTGCTGCCCCAGAGATATCTTCTTTGGACCAAAGATCTCCTTTGTGATTCCCTGTGAAACAACTGAGAATGTGCTCTGAGTCGTCTGAATGTTTCCTGCAGTCAGGAAGAGGACGAGTGACGGAATCATCTACATCCACAAACAGAAACGCCAAGAAACCACATCCAGCACTATACCTGTTCACACCTGAACACTTCATTACAGTTTAGCCAGATGGTTTTACATTTGGTAATAAAATGCATACTCAGATATGTAACTGTTTTAAATTCggctcagaccacctcctgaagtggtttaagtgaTCAGGTTTGTATCTGTCtgataaatgccataaatgttcAACCCTAATCCCCAAAAGTTGGGATGCTttgtaaaat
>XM_022684684.1
ccTTCATTCTAACCTGCGTTAATCTGATTATTGTTCATGTAAAAGCTGTATTTGTTctgcagctgactgttgactgttgtcagggtttaaaccGGTCAGTGGCACACCAAGATAgatgtgttgccaagatagaaacacactagaagtttacctgaacacacaacTACCTTTAATACCCTTGAATCTGTGAtgtcctattacttttgtaatatagtgtattttaatagGCTTCTAAAAGTGATGTCTTATTGGCAGTATTTTCCTGCCCCCTGTTAAAGAAGTGAATGTGTATAAATGCTCACACTGTCCACACTATGGGACGTGGTCCGATCTGCTGGTGCCGCCCCCCCGGCCCGTGGGAGAGAGATGGTGCTGTCAGAAAGGAGAGATATAAGGAGCTCAGTGTGTAAATCTTTACTTTAGATGAGTCTAACCGAGACATTCACCCACAGCCCAGCAGCTCGTACAggaaaacacactcacactcagGATAATAAAGATGAAAGCGGTACTTCTGGTGGCCGTTCTCCTGCTCGGGCTGCAGGCCGGAGATGCTGTTCCCTCCAGTCGCTGGTCCTGTTATAAAAAGGTTCTGAAGGACAGGAACTGTCACAGCATCGGTTTTGGACTTGGGTCCATGAGACCCATTGGATCCCTAGAGAATCATTTCTGGGAGGGGAACAGCTGTGACATGGTCTGCTACTGTAACTTCAGTGAGCTGCTCTGCTGCCCCAGAGATATCTTCTTTGGACCAAAGATCTCCTTTGTGATTCCCTGTGAAACAACTGAGAATGTGCTCTGAGTCGTCTGAATGTTTCCTGCAGTCAGGAAGAGGACGAGTGACGGAATCATCTACATCCACAAACAGAAACGCCAAGAAACCACATCCAGCACTATACCTGTTCACACCTGAACACTTCATTACAGTTTAGCCAGATGGTTTTACATTTGGTAATAAAATGCATACTCAGATATGTAACTGTTTTAAATTCggctcagaccacctcctgaagtggtttaagtgaTCAGGTTTGTATCTGTCtgataaatgccataaatgttcAACCCTAATCCCCAAAAGTTGGGATGCTttgtaaaatgtaagtaaatgtaaataaacgcAGAGTACAATGCAGTGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289085 False 776 TUCP 0.47 3 506425 511517
XM_022684684.1 True 1142 mRNA 0.44 3 506101 511559

Neighbor

gene id symbol gene type direction distance location
hand2 hand2,LOC107676684,LOC107558779,LOC107552491 coding upstream 37439 465499 ~ 468662 (+)
hpgd hpgd,LOC107552502,LOC107752225,LOC107737128,LOC107676678,LOC107558775 coding upstream 337041 135827 ~ 169060 (+)
glra3 glra3,LOC107670853,LOC107737127,LOC101174559 coding upstream 380249 27843 ~ 125852 (+)
hmgb2 hmgb2,hmgb2a,LOC100707400,LOC102792727,LOC107752228 coding downstream 7628 519187 ~ 528063 (+)
tnip2 NA coding downstream 854242 1365801 ~ 1374851 (+)
nr3c2 nr3c2,LOC107598757 coding downstream 1178518 1690077 ~ 1900094 (+)
prmt9 prmt9 coding downstream 1587931 2099490 ~ 2122451 (+)
znf827 znf827 coding downstream 2212039 2723598 ~ 2897529 (+)
LOC111195947 NA non-coding upstream 17558 476424 ~ 488543 (+)
G212921 NA non-coding upstream 150637 355052 ~ 355464 (+)
G212920 NA non-coding upstream 158268 347539 ~ 347833 (+)
G212919 NA non-coding upstream 164592 341307 ~ 341509 (+)
G212871 NA non-coding upstream 248509 254024 ~ 257592 (+)
G212940 galnt7,LOC107737119,LOC107551995 non-coding downstream 31921 543480 ~ 544402 (+)
G212945 NA non-coding downstream 68289 579848 ~ 581109 (+)
LOC111195934 NA non-coding downstream 76056 587615 ~ 592952 (+)
G213013 NA non-coding downstream 434406 945965 ~ 946193 (+)
G213014 NA non-coding downstream 458140 969699 ~ 970030 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 256370 229235 ~ 249731 (+)
LOC103042715 NA other downstream 829192 1340751 ~ 1351396 (+)
LOC103044168 NA other downstream 2782369 3293928 ~ 3358194 (+)
G213555 NA other downstream 3177010 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 3388683 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 3887026 4398585 ~ 4428962 (+)

Expression


Co-expression Network