G212871


Basic Information

Item Value
gene id G212871
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 254024 ~ 257592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU289005
TCTTTACCCATGTTTGTTCCATTGAAGAAGCATGTTCATCATAGAAGAACGTTTTAGAAGGACTTGATGTGAAGGTTCTGTTCAAGGTTAACCAGGTTTCAGCACACCTAATCCAGATAATCAGCTAAATAGAGCAGGGaaccactaaaatgtgcaggacatAGGGTTTTCAAGAGTTATAGAGCCATAAAAGAACCAGTTTTTGCATCTCATGAGAAACCCTTTgtatgacttttatttttaagagtgttctTTAAtttagaccctgtttacacctggttacTGCATCCAGAGTTTCAGGATTACAATCCAATTCTTCAAACCATTTTaaaaggtggtctgagacacatttaaatcaGATTCAAATTTGATTACTCATACCACTttagaaggtggtctgagacgcatttaaaaacAGAAGCAAATCTGAATAcccaaaccacttcagaaagtGGTCTGAGACTTATTTAAATCAGATTCAAAtccgatcactcaaaccactttagaaggtggtctgagacacatttcaATCAGATTCAAATACGAATACTTAAACCACTTTAGAAGTTGGTCTGAGACTTATTTAAAACAGATTCAAATCCAGTCAATCAAACCACTTTAGCtggtggtctgagatgcatttaaaccagatacaaatctgaaTACTCAAACTACTTCAGAAGGTGGTctaagatgcatttaaaacaaagtCAAATCCAGTcaatcaaaccacttcaggaggtggtctgagacacatttaaaccaGATTCAAATCCAATCACTAAAACCACTTCAAAAGGTagtctgagatgcatttaaaacagatacaaatctaatTACTCAAACCACTTTAGAAGGTGatctgagatgcatttaaaacagattcaaatctgatcactcaaaccacttcagaaggtgttctgagacacatttaaatcagatttaaatctGATCATTTAAATCACTTTAGAAGGTGGTCagagacgcatttaaaacagatacaaatctgataatttaaactactttaaaaggtggtctgagatgcatttaaacTAGATACAAATCTGAATACTCAAACTacttcagaaggtggtctgagacacctttaaaacagatgcaaataaaatcACCCAAACTGCTTTaaaaggtggtctgagacacatttaaatcagattcaaatctgatcactcaaaccaaaTCAGGAGGTTGTCTGAGACGcctttaaaacagatacaaatccgatcACTTATTCAAGAAGTGGTCTgagacaaataaaaatctaatctaatcaagATACAATCCAGATATTAGACACATAATGTAACCAGGTGTAAACGGTTTGTagtttttgctgtttgtttttgtgagcTGCTCCTTTAACCTCCTCTTTAGTCTCAGTTTCTCTCGCTGCCTAAAACTTATTCCTGACATGCTAACTGGTTCCAACCATTTATACCCATAATCCAACTCTGCTGCCTGCTATCAGTTACCAGCCAATCCCTGATCTCCTCCACTGCTTCTACATGTGGTTCATCAACACGATCAAATTCCCTCTGATCctgtttgttgcttttttttttctttttttttaggttgatCAAGAGAGCACTTTAACCCAAGGAGGTTTATTAttgatattgttattattattcccTTTTACTGTTATTGAAATGTTCTAGTTTTCCAATTTTCACTCTCAAAAATAAAGGTACTGGCAAGGCCTATTTGGGTGATACACAAAAAAGAAACTGGTTGCATTAAGAACCATGTTTAGTCATTTGTCAAAAGATTGGACACACCtctcattattttgtgttttttttatactgaagtTGTTTAATCTATGAAGAAACGCACAACAAACTCATCCTAATTCTCATGTTTAATCTCATACTTAAACTCCTCCCTAAACTCATTCTCAAACTCCTCAATCCCATCCCCAAACCCCTCCCCAGACTCATTCCCAAATTTATACCCAACCTCCTTACTGTTATCTTTAAACTTgtccccaaactcatccccaatctCATTCTCAAACTCCCCCCAAACTCATTCTCAAACTCCCCCCAAACTCATTCTCAAACTCCTCAAGCTCCTCttcaaactcatccccaatctCATTCTCAAACTCCCCCCAAACTCATTCTGAAACTGGTCACCAAACTCATTCTCAAATTCTATAatctctatactctatactgtGGTGTCACTCAAGTAAAACTTTGtaggacttttattttacagagtGTTGGTGTGCAGATGATGCATATCTgaaggatgatgatgatgatgatgatgatgatgatgatgtttatgCTGTTTTTGCTTGTCGCTCTAGAATTCCCACATTAGTGCCATTTAGCAGAAGCTACAGTAAACTGACATACGCCTGTTATAATcctaattatataatattatattcagcGACTCTGTGTAGTTTGAATGAATAcaatttgttttcttgtttttttttgcacatcatGTACATATTTAAGTATAGAGATTTAtatacataattttatttttaaatattttagcaaaAAGTTGATGGATTATGTTTTTCTTCCTCGTTTGATAAGGTGAATTTCTCTTTTTGcacttctgattttttttctccagatcGCGAAACATTCCCGAATTTTGTGTTGCGTCTTTGATGTCCACAGTCTGTCATACAAAACATACATAACAAATGACTAACAATCTAATCTGATGCAAACCATacaatttttacaataaaaccctatatttttatttaaaattaattctgCAGTTCCAGTCTGCTGTTGTTCATGgaaaatctttaaaacagcaacttttcaagagataataaatgctttgggatgatttatgtttattaacaatTACAATTATCCTCAATTTGGCTTTTTAATGCAGGGTgaataattttaagaaaaaaattaatcctctctaaattcattaaaatatatttttggggGAACAGCAGAGCTGAATTGCAGGATTATCCTGTAATATTATCTGCTATGTTTGATGGATTGTCTCTAGCAGGACATTTTCAGAACTTTAGAAGAAGCAGAGATGTTGTGTAGGGCAGGTTTGTTTGTGAATGGCAACACTGGACTAAAA
>TU289006
TCTTTACCCATGTTTGTTCCATTGAAGAAGCATGTTCATCATAGAAGAACGTTTTAGAAGGACTTGATGTGAAGGTTCTGTTCAAGGTTAACCAGGTTTCAGCACACCTAATCCAGATAATCAGCTAAATAGAGCAGGGaaccactaaaatgtgcaggacatAGGGTTTTCAAGAGTTATAGAGCCATAAAAGAACCAGTTTTTGCATCTCATGAGAAACCCTTTgtatgacttttatttttaagagtgttctTTAAtttagaccctgtttacacctggttacTGCATCCAGAGTTTCAGGATTACAATCCAATTCTTCAAACCATTTTaaaaggtggtctgagacacatttaaatcaGATTCAAATTTGATTACTCATACCACTttagaaggtggtctgagacgcatttaaaaacAGAAGCAAATCTGAATAcccaaaccacttcagaaagtGGTCTGAGACTTATTTAAAACAGATTCAAATCCAGTCAGTCAAACCACTTTAgcaggtggtctgagacacatttaaatcaGATTCAAATCCGATCACTCAAACCATTTTAAAAGGTGGCCTGAGAcatttaaatcagattaaaatctGATCAATCATACCACTTTAAatggtggtctgagacgcatttaaaacagatgcaaatctgatcgctcaaaccacttcagaaggtggtctgaACACATTTAAATCAGATTCAAAtccgatcactcaaaccactttagaaggtggtctgagacacatttcaATCAGATTCAAATACGAATACTTAAACCACTTTAGAAGTTGGTCTGAGACTTATTTAAAACAGATTCAAATCCAGTCAATCAAACCACTTTAGCtggtggtctgagatgcatttaaaccagatacaaatctgaaTACTCAAACTACTTCAGAAGGTGGTctaagatgcatttaaaacaaagtCAAATCCAGTcaatcaaaccacttcaggaggtggtctgagacacatttaaaccaGATTCAAATCCAATCACTAAAACCACTTCAAAAGGTagtctgagatgcatttaaaacagatacaaatctaatTACTCAAACCACTTTAGAAGGTGatctgagatgcatttaaaacagattcaaatctgatcactcaaaccacttcagaaggtgttctgagacacatttaaatcagatttaaatctGATCATTTAAATCACTTTAGAAGGTGGTCagagacgcatttaaaacagatacaaatctgataatttaaactactttaaaaggtggtctgagatgcatttaaacTAGATACAAATCTGAATACTCAAACTacttcagaaggtggtctgagacacctttaaaacagatgcaaataaaatcACCCAAACTGCTTTaaaaggtggtctgagacacatttaaatcagattcaaatctgatcactcaaaccaaaTCAGGAGGTTGTCTGAGACGcctttaaaacagatacaaatccgatcACTTATTCAAGAAGTGGTCTgagacaaataaaaatctaatctaatcaagATACAATCCAGATATTAGACACATAATGTAACCAGGTGTAAACGGTTTGTagtttttgctgtttgtttttgtgagcTGCTCCTTTAACCTCCTCTTTAGTCTCAGTTTCTCTCGCTGCCTAAAACTTATTCCTGACATGCTAACTGGTTCCAACCATTTATACCCATAATCCAACTCTGCTGCCTGCTATCAGTTACCAGCCAATCCCTGATCTCCTCCACTGCTTCTACATGTGGTTCATCAACACGATCAAATTCCCTCTGATCctgtttgttgcttttttttttctttttttttaggttgatCAAGAGAGCACTTTAACCCAAGGAGGTTTATTAttgatattgttattattattcccTTTTACTGTTATTGAAATGTTCTAGTTTTCCAATTTTCACTCTCAAAAATAAAGGTACTGGCAAGGCCTATTTGGGTGATACACAAAAAAGAAACTGGTTGCATTAAGAACCATGTTTAGTCATTTGTCAAAAGATTGGACACACCtctcattattttgtgttttttttatactgaagtTGTTTAATCTATGAAGAAACGCACAACAAACTCATCCTAATTCTCATGTTTAATCTCATACTTAAACTCCTCCCTAAACTCATTCTCAAACTCCTCAATCCCATCCCCAAACCCCTCCCCAGACTCATTCCCAAATTTATACCCAACCTCCTTACTGTTATCTTTAAACTTgtccccaaactcatccccaatctCATTCTCAAACTCCCCCCAAACTCATTCTCAAACTCCCCCCAAACTCATTCTCAAACTCCTCAAGCTCCTCttcaaactcatccccaatctCATTCTCAAACTCCCCCCAAACTCATTCTGAAACTGGTCACCAAACTCATTCTCAAATTCTATAatctctatactctatactgtGGTGTCACTCAAGTAAAACTTTGtaggacttttattttacagagtGTTGGTGTGCAGATGATGCATATCTgaaggatgatgatgatgatgatgatgatgatgatgatgtttatgCTGTTTTTGCTTGTCGCTCTAGAATTCCCACATTAGTGCCATTTAGCAGAAGCTACAGTAAACTGACATACGCCTGTTATAATcctaattatataatattatattcagcGACTCTGTGTAGTTTGAATGAATAcaatttgttttcttgtttttttttgcacatcatGTACATATTTAAGTATAGAGATTTAtatacataattttatttttaaatattttagcaaaAAGTTGATGGATTATGTTTTTCTTCCTCGTTTGATAAGGTGAATTTCTCTTTTTGcacttctgattttttttctccagatcGCGAAACATTCCCGAATTTTGTGTTGCGTCTTTGATGTCCACAGTCTGTCATACAAAACATACATAACAAATGACTAACAATCTAATCTGATGCAAACCATacaatttttacaataaaaccctatatttttatttaaaattaattctgCAGTTCCAGTCTGCTGTTGTTCATGgaaaatctttaaaacagcaacttttcaagagataataaatgctttgggatgatttatgtttattaacaatTACAATTATCCTCAATTTGGCTTTTTAATGCAGGGTgaataattttaagaaaaaaattaatcctctctaaattcattaaaatatatttttggggGAACAGCAGAGCTGAATTGCAGGATTATCCTGTAATATTATCTGCTATGTTTGATGGATTGTCTCTAGCAGGACATTTTCAGAACTTTAGAAGAAGCAGAGATGTTGTGTAGGGCAGGTTTGTTTGTGAATGGCAACACTGGACTAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289005 False 3108 lncRNA 0.35 2 254024 257592
TU289006 True 3337 lncRNA 0.35 2 254024 257592

Neighbor

gene id symbol gene type direction distance location
hpgd hpgd,LOC107552502,LOC107752225,LOC107737128,LOC107676678,LOC107558775 coding upstream 84964 135827 ~ 169060 (+)
glra3 glra3,LOC107670853,LOC107737127,LOC101174559 coding upstream 128172 27843 ~ 125852 (+)
hand2 hand2,LOC107676684,LOC107558779,LOC107552491 coding downstream 207907 465499 ~ 468662 (+)
hmgb2 hmgb2,hmgb2a,LOC100707400,LOC102792727,LOC107752228 coding downstream 261595 519187 ~ 528063 (+)
tnip2 NA coding downstream 1108209 1365801 ~ 1374851 (+)
nr3c2 nr3c2,LOC107598757 coding downstream 1432485 1690077 ~ 1900094 (+)
prmt9 prmt9 coding downstream 1841898 2099490 ~ 2122451 (+)
G212872 NA non-coding upstream 646 251844 ~ 253378 (+)
G212873 NA non-coding upstream 21232 195784 ~ 232792 (+)
G212869 NA non-coding upstream 82952 164499 ~ 171072 (+)
G212866 NA non-coding upstream 158200 91250 ~ 95824 (+)
G212919 NA non-coding downstream 83715 341307 ~ 341509 (+)
G212920 NA non-coding downstream 89947 347539 ~ 347833 (+)
G212921 NA non-coding downstream 97460 355052 ~ 355464 (+)
LOC111195947 NA non-coding downstream 218832 476424 ~ 488543 (+)
G212940 galnt7,LOC107737119,LOC107551995 non-coding downstream 285888 543480 ~ 544402 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 4293 229235 ~ 249731 (+)
scrg1 NA other downstream 248509 506101 ~ 511559 (+)
LOC103042715 NA other downstream 1083159 1340751 ~ 1351396 (+)
LOC103044168 NA other downstream 3036336 3293928 ~ 3358194 (+)
G213555 NA other downstream 3430977 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 3642650 3900242 ~ 4367145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000444 NA non-coding NC_007112.7 CM002885.2 38343320 ~ 38346108 (+)