tnip2


Basic Information

Item Value
gene id tnip2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 1365801 ~ 1374851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232149.3
TTCGCTCTTTCTCGGTTTCAGAACGTCTGGATACAAAGTAACTGAGAAAACCCGCCTGAAAAGAGTGAGGAACAGCTGAAGAACAGCTGAGGAACAGCTGAACAGCCCGGGACTGTTCCCTGGAGGGGTTAGATGAATGTTTGGGAGTGCCAAAAAATAtagaacacataaaaaaaacaaaaaaaaaaacacacagagcagcGCGAGATGGGCACGGGGAAGTCCCGCAGGAAATCCCCGCGTGGCGCACATCATTTCCTCCAAACTGACAGCTCTGACCTTCTGTCTCACAGACCTGCCTGTCTGCCTGActgagagcgagcgagagagagacctcCGGCTCGAGCGCACCGCGCGCAAAGACCCCCAGAGCGAGGGGCACCTTCTCTTCCACCAGACCCTCAAACTCCAGGACCCTCCAgacctatacacacaccacacacacatacacacacacacaaccatggATCTCCACACCAAGAAGCAGGAGGATCACCCCAAACTGCGCAGCTGCTCCACCATCAACACCTTCTACCACGAGACCCAGCAGGAACTGGCCAGACTGGGCCAGACCATCCTCTCCAAAGACGGGCAGATCGCCGAGCTGAAGGCCAGGCTGGCCCGGCACGAGAGGACCACCGTGGGCCCCGTGGAGGGGGAGGACCTGGTGGGACCCTCCAGATCTCTGGTGGGCAGCCTGTGTAAAGAAATCCACAAATTAAAGCAGAAGCTGAAGGACCAGGAGCTGGACGCAGCGCAGAAACTGGATTCCAGCAAACGAGAGATCCAGGTTCTGCAGCAGAAGCTGAGGGAGAAGGAGCAGGAGCTGGAGAGCGTCCGGCAGCGACCCGAGCACCAAAAGGACCAGGAGATCCAGCACCTGCACTCCATCCTGGCCGAGAGGGACCGGACCCAGGCCACCAAGAACGTGCTGTACAGCTCGCTGGTGGCGGAGGCGGAGGAGCTGAGGGTGCAGCTGGGGGCCACGGTACGAGTGTGCCAGGATCTACTGGGGAGACTGGAGAAGGAGAAGAGCCGGACCACCAACACTGAGCACAGGGGCAGTGAGATGATGGATGGCTCTGAGGTCGCTCATCTGAACAGCCTGGTCAACAGATTAAAGGAGGAGAATCAGCAGCTGAAAAATAGAGTGGCATATGTGGAGAATCTGAACTCACGGTGGCAGAAGTATGATGTGAGTAGGGAGGAGTATGTGAGGGGACTGTGTCAGAAGCTGAAGGAGTCTACGGGCATGGCGGCACCGGGCGGCACGGCTCTGTATCAGCAGGAGATCGGGCGGCTGAAcagactgctggaggagaagaTGCTGGAGTGTGAGAGACTGagccgagagagagacagcggcTCACTCAGAGACCGGGAACGCATCCAGATGCTGGAACAGCAGGTCGAAGCTTATATCGAAGACTTCAAGTCTGAGAGAGCCGACAGGGAAAGAGCTCAGGATAAAATCCTGAACCTCGAGGAGGAGGTGACGCGTCTGAAGCTCCAAATCCACGCCCAGCACGTCAAAGAACCCCAGCCAACACGGCGGCTCCCCATCAGCCTGAAGAAACCGTCCCGCAAACAGACAGAAACGGCCGAGCCTCTGCTGAGGAACAGTCCTCCAGAGTCCAGCGCAAAACGGACTATCGGACAGTCGCTGGCGCAGGATCCCACCGACCTCATGTGTCCGCGGTGCATGGCCGTATACGACGAGAAAAACACGGACGAATACTTTAACCACTGCACTGACTGTGCTAAACTGTGAACTCTGAACGGACTTACTCTTCAAACTGAATGCACTACAGGAGCACGTGGAGGCACGGTGGAACCACGGCCTTCCTGAAGGTAGAGGACGAGGTATGTCTGCTACTGGTGATGCTGATGGACATTAAACTCTGGGAGTGGTTGATTACCCTGCGTTTACACTGGCAGGAGACAAGGCGGCAAGCGAACAATCGTTTCCTGTGGGAGTACGTGATTTGTGGGAGTGCTGCTATTTGGCGACTAGTGGCAAACGACACAA
>XM_007232150.3
TTCGCTCTTTCTCGGTTTCAGAACGTCTGGATACAAAGTAACTGAGAAAACCCGCCTGAAAAGAGTGAGGAACAGCTGAAGAACAGCTGAGGAACAGCTGAACAGCCCGGGACTGTTCCCTGGAGGGGTTAGATGAATGTTTGGGAGTGCCAAAAAATAtagaacacataaaaaaaacaaaaaaaaaaacacacagagcagcGCGAGATGGGCACGGGGAAGTCCCGCAGGAAATCCCCGCGTGGCGCACATCATTTCCTCCAAACTGACAGCTCTGACCTTCTGTCTCACAGACCTGCCTGTCTGCCTGActgagagcgagcgagagagagacctcCGGCTCGAGCGCACCGCGCGCAAAGACCCCCAGAGCGAGGGGCACCTTCTCTTCCACCAGACCCTCAAACTCCAGGACCCTCCAgacctatacacacaccacacacacatacacacacacacaaccatggATCTCCACACCAAGAAGCAGGAGGATCACCCCAAACTGCGCAGCTGCTCCACCATCAACACCTTCTACCACGAGACCCAGCAGGAACTGGCCAGACTGGGCCAGACCATCCTCTCCAAAGACGGGCAGATCGCCGAGCTGAAGGCCAGGCTGGCCCGGCACGAGAGGACCACCGTGGGCCCCGTGGAGGGGGAGGACCTGGTGGGACCCTCCAGATCTCTGGTGGGCAGCCTGTGTAAAGAAATCCACAAATTAAAGCAGAAGCTGAAGGACCAGGAGCTGGACGCAGCGCAGAAACTGGATTCCAGCAAACGAGAGATCCAGGTTCTGCAGCAGAAGCTGAGGGAGAAGGAGCAGGAGCTGGAGAGCGTCCGGCAGCGACCCGAGCACCAAAAGGACCAGGAGATCCAGCACCTGCACTCCATCCTGGCCGAGAGGGACCGGACCCAGGCCACCAAGAACGTGCTGTACAGCTCGCTGGTGGCGGAGGCGGAGGAGCTGAGGGTGCAGCTGGGGGCCACGGTACGAGTGTGCCAGGATCTACTGGGGAGACTGGAGAAGGAGAAGAGCCGGACCACCAACACTGAGCACAGGGGCAGTGAGATGATGGATGGCTCTGAGGTCGCTCATCTGAACAGCCTGGTCAACAGATTAAAGGAGGAGAATCAGCAGCTGAAAAATAGAGTGGCATATGTGGAGAATCTGAACTCACGGTGGCAGAAGTATGATGTGAGTAGGGAGGAGTATGTGAGGGGACTGTGTCAGAAGCTGAAGGAGTCTACGGGCATGGCGGCACCGGGCGGCACGGCTCTGTATCAGCAGGAGATCGGGCGGCTGAAcagactgctggaggagaagaTGCTGGAGTGTGAGAGACTGagccgagagagagacagcggcTCACTCAGAGACCGGGAACGCATCCAGATGCTGGAACAGCAGGTCGAAGCTTATATCGAAGACTTCAAGTCTGAGAGAGCCGACAGGGAAAGAGCTCAGGATAAAATCCTGAACCTCGAGGAGGAGGTGACGCGTCTGAAGCTCCAAATCCACGCCCAGGCAAGCCACACGTCAAAGAACCCCAGCCAACACGGCGGCTCCCCATCAGCCTGAAGAAACCGTCCCGCAAACAGACAGAAACGGCCGAGCCTCTGCTGAGGAACAGTCCTCCAGAGTCCAGCGCAAAACGGACTATCGGACAGTCGCTG

Function

NR:

description
PREDICTED: TNFAIP3-interacting protein 2 isoform X1

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232149.3 True 2029 mRNA 0.56 6 1365801 1374851
XM_007232150.3 False 1674 mRNA 0.57 6 1365801 1374488

Neighbor

gene id symbol gene type direction distance location
hmgb2 hmgb2,hmgb2a,LOC100707400,LOC102792727,LOC107752228 coding upstream 837738 519187 ~ 528063 (+)
hand2 hand2,LOC107676684,LOC107558779,LOC107552491 coding upstream 897139 465499 ~ 468662 (+)
hpgd hpgd,LOC107552502,LOC107752225,LOC107737128,LOC107676678,LOC107558775 coding upstream 1196741 135827 ~ 169060 (+)
glra3 glra3,LOC107670853,LOC107737127,LOC101174559 coding upstream 1239949 27843 ~ 125852 (+)
nr3c2 nr3c2,LOC107598757 coding downstream 315226 1690077 ~ 1900094 (+)
prmt9 prmt9 coding downstream 724639 2099490 ~ 2122451 (+)
znf827 znf827 coding downstream 1348747 2723598 ~ 2897529 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding downstream 2002000 3376851 ~ 3441060 (+)
LOC103022278 NA coding downstream 2080097 3454948 ~ 3475096 (+)
G213073 NA non-coding upstream 2742 1346558 ~ 1363059 (+)
G213061 NA non-coding upstream 13313 1294551 ~ 1352488 (+)
G213060 NA non-coding upstream 17600 1294041 ~ 1348201 (+)
G213056 NA non-coding upstream 37854 1254531 ~ 1327947 (+)
G213048 NA non-coding upstream 156772 1200382 ~ 1209029 (+)
G213137 NA non-coding downstream 133236 1508087 ~ 1510758 (+)
G213142 NA non-coding downstream 182887 1557738 ~ 1603566 (+)
G213187 NA non-coding downstream 334472 1709323 ~ 1709588 (+)
G213193 NA non-coding downstream 342083 1716934 ~ 1722077 (+)
G213164 NA non-coding downstream 350895 1725746 ~ 1726553 (+)
LOC103042715 NA other upstream 14405 1340751 ~ 1351396 (+)
scrg1 NA other upstream 854242 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 1116070 229235 ~ 249731 (+)
LOC103044168 NA other downstream 1919077 3293928 ~ 3358194 (+)
G213555 NA other downstream 2313718 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 2525391 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 3023734 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 3136088 4510939 ~ 4590452 (+)

Expression


Co-expression Network