G213193


Basic Information

Item Value
gene id G213193
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 1716934 ~ 1722077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU289442
AAACTGTGcacttaccctgctaattgaacactctttacactctgctcttactggtgcaataatgtgcaattaatgaagattggccaccaggctgctctaatttagccatgaatctcccacactaaaatgacaggtgtttaagtttcattgtccaaccctagTATATATTAGCCATATTAGCTCCTTTTCCATGACTCTGctattttagtgtatattttaggTTTCTGAGCTTTTAACACAATGCTGTCTCAATACTGTCATTATGGCACAGGCTGTCTGAGAGGCTGCAGACTGATGTGATATAAATGTTGAGTTTTATTTGAAAGGAAAGTGAAGTCTGGTCTGAAAAATCACTCTGGACTTAAATTACCAGCCTCAGACTAACAGTGGCACAGTGGCATGTGTTATGGAAAAAAGTGCCACATGCAATTAAGTGTGTAGTGCGCATGCGTCcacaaggacacacacacacaagcacacaaaagcacacactctctctcagacaGCACTGGGCTGGCACACTAATAAAAGTGTAGTTCCTGCACACTTGGGATCTGGGCTCAGAATGGCTGTCCTCATTTGAACTTCTCTCTGGGTGAAACTGCGCCAGATTTCTGCGAGGCAGAGGGAGAATCTCTCACACTGTTACTGAGCTCTAGCTCTAGCTCTATAACACCACTGCCTACCCAACTTCTACACTCGTATAACAGCCAGGCTGCAGTAAATGCCACAGATCTAACAAAGAAGTTCAGCCAGAAATCAAATGTACACAGTTCTCTGTTCCTTCTTGGTTTCAAGACTTGCTTGGGATCCaagtttactttatttctttggTTTTGTACTGGAGCTGAAAGGCTAAAATGTCCACGAAGTTCATGTCTGATTGATTAGCGCTGTAAAAACCTGCATATACTGCATACAGTActatttaaaagtttggacaaatcagaatattaatattttagattcttcaaaagtagctcctcttgcttagatacagacacttttgcacatcttggctggattttctcagtcagctttataaaaTAGAgttacctggaattcaggctttcagttaacagctgtgctaacccgaaaagttaattacttgaatctTCTTTATTTCTTGCCTTCTTAAAGCATCCGCTGTGTTGTTGAGTCATTAGACATAAGTTTAAGTGAGGTGAATCAGTAGTTTTTGGTTTGTAAAGTGAGTTAAATCTCTGGAATGTAGGCACAAGAATATATGTCTCTGGAATATATGTCCAAAAGACTTTTGGGGTCTTCGAAGTATTGGTCCAAGAGAAGTCTGGCATATTTGGGGTAAGAGTCCAAGTGAAGTCTGGGGTCTCTGGGGTACAAGTCCAGGTCTACAGACTGTAAGGTATGAGTTGTGACACTGGGGTGTAAGTAAGTAAAGTCATTGGAGAGTAAATTTGAGTTGAATCTGTAGTTTTTGGTTTGTAAGTTGAGTAAAATCTCTGGGTAGGTCCTAGAGAAGTCTGGAGTCTTTAGAGTATGGGTCCAAGAGAATTCTGGACTCTCTGGAGTATGAGTCATAGAGAAGTCAGGTGTCTCTGGAGTATGGGTCCAAGAGTAGTCTGGAGTCTCTGGAGTATGAATCCAAGAGAAGTCTGGAGTCTCTGTAGTATGGGTCCAAGAGAAGTCTGGTGTCTCTGGAGTATGGGTCCAAGAGAAGTCTGCAGTCTCTAGGGTACAAATTCAAGTGGAATCTGTGGTCTCTAGGGTACAAGTCCAAATAAAAGTTGATCCTCTGGGGAGTAGGTATGAGGTAAATCTGGCGTCCCAAAGCATTAGCTTTAAGCCTTTCCTGGGTTCCTGATTGCCCTTCCCCTGATTTACTCTTCATTACATGCCCATTTTGAGCTCCTCTTCTGTGGTCACTGACTCAAAAAGACAATAATCCTGAGCCCTTGTTCACATAGTGACCCATATTTCCATAACTAACTAAAGAAATCTGAAGAAAATTAGCTGCTCTCAggtaacaacaacaacatcacCATATTCAGAAGTGTCAGTCACATTTTACTctctatgtactgtattttttactctataaggtgcacttgaagtcctttaattttcccaaatattgacagtgcactttataatccactgtgccttatgtataaattctaccagccaggtattaaggagcagtaaagccaattATGTAGGCATTATGAAGGAGTATCAGTGGATTTTTTTCAACTCTTCAggctggaacagtattagcattagctgttaaccGCAGTGCTAGTTCTTTACACTGTTCAAAGGacagtatattggactgtatcggactgctaaccctggctagcactgctgctaactggggctgctCTCCACGGCTAGCGTTGCTACTAACCGCTTCTGCTAACCGCTACTGCTAATGGCTGCTGCTAATCGCTACTGCTAACTGACTGTTGCTAATTGTTGCTTAGAGATCTCTTGAATTAGAAacgaaacatggtgacacccttgtttcTTACTATggttgcttaaaatgtgccttataatccggtgcaccttttgtatgcatgaaaatataccagaaaatagacgttcattgatagcaTTGATACCTTATAGTCTCCGTATAATACGGTAAATATTGGGACTGTCATTACTTTAAGTCAAGACTGTTACATAAAGATTTTTGAGGTtgaaattgtttaatttttggCTCTGTTTTATTCTTGCTAGACTTTCTATTGATGGCTTGAGTTAAGGTTTATGTTTTGTCTTAATAAATTTCCTCTTTATTGCTGGATCTCGTAGATAAAGCTGACTTAATGCTCTTGATGCAgcagtatgtacagtacagataTGTGTCAGTAGGTCATCCGAGCCACTGTTCTTGAAGCACCGGTAAGCATCGCTCTCGCACTCGTGTTCCTTACAGTCGAACATGCACGAACGCGCAAACAAAGCACAACTTGGCCATTCATGTTTAATTGGAAGTTTTGCTGGAGCGTTTCACGCTGGAGAGCTTCTCTTTGTTCCTGGCTGAACGTGTTTTAGTTCGTCGGTGGATGAGGCTGTGCGAAGCAGGCAGGCGAAAACTGCCCCGCTCGGCCGGAAACGACGGCCATTAATGAAAGcactgggagaaaaaaaaaaagcttaattgtTCCGCATGGCTTGTTGGCGAAGTAGGTCAGGCTCGGTCTGCCTCAATTAAACGAGAGAGGAGGGTACGGTCCGGAAATGCAGCACAACTTTccaagtacatttttacatcacCGTGCTTCACGAATACGTGTGTAAACAAGGCTAGCGACATTACTGAGTGTTGCAGATGAATCTTTCAGAAAGGCCAAAGCTGTGGCAGCGAATGTGACCTAGAAAGCGCTGGCGTTCCCGCCCCCTCACTTATGCGTCAGGAACAAACTCGCGCTCTTTGCACCGTACTGTATGTATCGACTCCAGAAGAGCTATGCCCTTCATTTCGTTTGCTTCGTTCCACTCGCTGGAACTGGGCTTTAGGGCACCGGGGTCATAAATCATTCCTGTCTTGCCCTGTGGGGGACAGTCAATGACACACTGACCCAGCAGGTAAAGAGACGCAGGCAGGTGTCGGGTGGCGCTTCATAGAAAAGACGCTATATCAAGTTCACGAGTCTCAAAGGCAGGCAAGACTATGGAGAGGAAACACCAGCAGGAAGCAGGGGGAGAAAGGCATGAGACTGGCGTGAGAACATAATTTATGGCGTCTGGAATAACAGCTCGGAGCAACGAGTGAGAATATACAGTAGTGGAGGGTGTAGAGGATTAGGGAACGAGGAAGGAATACTGTAAAGTcttgtatgtacagtacaggccaaaaatcttggacacaccttctctttttcaatgactaattacattgtagattctcactgaaggcatccaaactatgaatgaacacatgtggagttttatattctagtttcttcaaaatagccaccctttgctctgattactgctttgcacactcttggcatcattctctcaatgagcttcattaagaggtggccacctgaaataaaaagttttccaacagtcttgaaggaaggagttcccagaggtgtttattagcacttgttgctcctttgccttcttcactctgtgctccagctcaccccaaacctcaaatccggattgggttcaggtccagtgtctgtggaggacagctctttttttgttaagtacataaaactccacatgtgttcactCACacttttgatgcttcagtgagaatctacaatgtaaatagtcatgaaaaaataaagaaaacgcattgaaaatgagaaggtgtgtctaaacttttggcctgtgctgttctaaaatGCAGAAAATGACATATTCCTTCTTTAAGCTTCTTTGAGCTTCTTTGAGCTTGTTGATAATGGTTGCCTTCGCTAAAGAAACCCAGAAAGAACCcagtttttaatggtttaatgaGTTTGCATCATGCTTTTAGTTTGTACTGTTGCCTGTTGACTGTTGACCATCTTCTTTGAAATCTGAAATGAGGACATACCGTATTTTCCTTAATATTATCCCATTTACCTTTTAtctattttcctattttaaagtggttgaaTGAATCAAGGAAGGTCTTTCTcttaatattagtttaatattaGGAGGAGTGGAACGACAAGGCAAAACACAAAACTACTGTATATGTAATAGTTGATTGTGCCTACTGGTCAGAAAACATTTTAGAGATAAAATGTTTAGagaaaaaatgttatatataaatacatccttcgcatttttattattttctatgttACAGATGAAtattgaagacatcaaaacCATGAAAGAAAGCATATGCAATTATTAATTCAACAAAAAAGGTGTTAAACTGAGccaaaatatatttcatgttttagattcttcaaagtagcccCTCTTGCTTTGCCCACTCTTGGGAAAATTCTTGATTCTTGATTTTCTCAGTCACTTTATAAGGTAGAACATAAAACGGTTCTCCAATTATCTTAAAGTAgttctagaggtgctgagcACTTGTTAACTGCTGAGAACTAATGATgaatgcaccaggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289442 True 5082 lncRNA 0.41 2 1716934 1722077

Neighbor

gene id symbol gene type direction distance location
tnip2 NA coding upstream 342083 1365801 ~ 1374851 (+)
hmgb2 hmgb2,hmgb2a,LOC100707400,LOC102792727,LOC107752228 coding upstream 1188871 519187 ~ 528063 (+)
hand2 hand2,LOC107676684,LOC107558779,LOC107552491 coding upstream 1248272 465499 ~ 468662 (+)
hpgd hpgd,LOC107552502,LOC107752225,LOC107737128,LOC107676678,LOC107558775 coding upstream 1547874 135827 ~ 169060 (+)
glra3 glra3,LOC107670853,LOC107737127,LOC101174559 coding upstream 1591082 27843 ~ 125852 (+)
prmt9 prmt9 coding downstream 377413 2099490 ~ 2122451 (+)
znf827 znf827 coding downstream 1001521 2723598 ~ 2897529 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding downstream 1654774 3376851 ~ 3441060 (+)
LOC103022278 NA coding downstream 1732871 3454948 ~ 3475096 (+)
LOC103021981 NA coding downstream 1757407 3479484 ~ 3499830 (+)
G213187 NA non-coding upstream 7346 1709323 ~ 1709588 (+)
G213142 NA non-coding upstream 113368 1557738 ~ 1603566 (+)
G213137 NA non-coding upstream 206176 1508087 ~ 1510758 (+)
G213073 NA non-coding upstream 353875 1346558 ~ 1363059 (+)
G213061 NA non-coding upstream 364446 1294551 ~ 1352488 (+)
G213164 NA non-coding downstream 3669 1725746 ~ 1726553 (+)
G213199 NA non-coding downstream 19509 1741586 ~ 1742945 (+)
G213201 NA non-coding downstream 41338 1763415 ~ 1766026 (+)
G213204 NA non-coding downstream 51795 1773872 ~ 1775536 (+)
G213208 NA non-coding downstream 60274 1782351 ~ 1804464 (+)
LOC103042715 NA other upstream 365538 1340751 ~ 1351396 (+)
scrg1 NA other upstream 1205375 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 1467203 229235 ~ 249731 (+)
LOC103044168 NA other downstream 1571851 3293928 ~ 3358194 (+)
G213555 NA other downstream 1966492 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 2178165 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 2676508 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 2788862 4510939 ~ 4590452 (+)

Expression


Co-expression Network