RNA id: XM_007232149.3


Basic Information

Item Value
RNA id XM_007232149.3
length 2029
RNA type mRNA
GC content 0.56
exon number 6
gene id tnip2
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 1365801 ~ 1374851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCGCTCTTTCTCGGTTTCAGAACGTCTGGATACAAAGTAACTGAGAAAACCCGCCTGAAAAGAGTGAGGAACAGCTGAAGAACAGCTGAGGAACAGCTGAACAGCCCGGGACTGTTCCCTGGAGGGGTTAGATGAATGTTTGGGAGTGCCAAAAAATAtagaacacataaaaaaaacaaaaaaaaaaacacacagagcagcGCGAGATGGGCACGGGGAAGTCCCGCAGGAAATCCCCGCGTGGCGCACATCATTTCCTCCAAACTGACAGCTCTGACCTTCTGTCTCACAGACCTGCCTGTCTGCCTGActgagagcgagcgagagagagacctcCGGCTCGAGCGCACCGCGCGCAAAGACCCCCAGAGCGAGGGGCACCTTCTCTTCCACCAGACCCTCAAACTCCAGGACCCTCCAgacctatacacacaccacacacacatacacacacacacaaccatggATCTCCACACCAAGAAGCAGGAGGATCACCCCAAACTGCGCAGCTGCTCCACCATCAACACCTTCTACCACGAGACCCAGCAGGAACTGGCCAGACTGGGCCAGACCATCCTCTCCAAAGACGGGCAGATCGCCGAGCTGAAGGCCAGGCTGGCCCGGCACGAGAGGACCACCGTGGGCCCCGTGGAGGGGGAGGACCTGGTGGGACCCTCCAGATCTCTGGTGGGCAGCCTGTGTAAAGAAATCCACAAATTAAAGCAGAAGCTGAAGGACCAGGAGCTGGACGCAGCGCAGAAACTGGATTCCAGCAAACGAGAGATCCAGGTTCTGCAGCAGAAGCTGAGGGAGAAGGAGCAGGAGCTGGAGAGCGTCCGGCAGCGACCCGAGCACCAAAAGGACCAGGAGATCCAGCACCTGCACTCCATCCTGGCCGAGAGGGACCGGACCCAGGCCACCAAGAACGTGCTGTACAGCTCGCTGGTGGCGGAGGCGGAGGAGCTGAGGGTGCAGCTGGGGGCCACGGTACGAGTGTGCCAGGATCTACTGGGGAGACTGGAGAAGGAGAAGAGCCGGACCACCAACACTGAGCACAGGGGCAGTGAGATGATGGATGGCTCTGAGGTCGCTCATCTGAACAGCCTGGTCAACAGATTAAAGGAGGAGAATCAGCAGCTGAAAAATAGAGTGGCATATGTGGAGAATCTGAACTCACGGTGGCAGAAGTATGATGTGAGTAGGGAGGAGTATGTGAGGGGACTGTGTCAGAAGCTGAAGGAGTCTACGGGCATGGCGGCACCGGGCGGCACGGCTCTGTATCAGCAGGAGATCGGGCGGCTGAAcagactgctggaggagaagaTGCTGGAGTGTGAGAGACTGagccgagagagagacagcggcTCACTCAGAGACCGGGAACGCATCCAGATGCTGGAACAGCAGGTCGAAGCTTATATCGAAGACTTCAAGTCTGAGAGAGCCGACAGGGAAAGAGCTCAGGATAAAATCCTGAACCTCGAGGAGGAGGTGACGCGTCTGAAGCTCCAAATCCACGCCCAGCACGTCAAAGAACCCCAGCCAACACGGCGGCTCCCCATCAGCCTGAAGAAACCGTCCCGCAAACAGACAGAAACGGCCGAGCCTCTGCTGAGGAACAGTCCTCCAGAGTCCAGCGCAAAACGGACTATCGGACAGTCGCTGGCGCAGGATCCCACCGACCTCATGTGTCCGCGGTGCATGGCCGTATACGACGAGAAAAACACGGACGAATACTTTAACCACTGCACTGACTGTGCTAAACTGTGAACTCTGAACGGACTTACTCTTCAAACTGAATGCACTACAGGAGCACGTGGAGGCACGGTGGAACCACGGCCTTCCTGAAGGTAGAGGACGAGGTATGTCTGCTACTGGTGATGCTGATGGACATTAAACTCTGGGAGTGGTTGATTACCCTGCGTTTACACTGGCAGGAGACAAGGCGGCAAGCGAACAATCGTTTCCTGTGGGAGTACGTGATTTGTGGGAGTGCTGCTATTTGGCGACTAGTGGCAAACGACACAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289273 lncRNA upstream 2742 1346558 ~ 1363059 (+) True G213073
TU289259 lncRNA upstream 13313 1294551 ~ 1352488 (+) True G213061
TU289257 lncRNA upstream 17600 1294041 ~ 1348201 (+) True G213060
TU289251 lncRNA upstream 37854 1254531 ~ 1327947 (+) True G213056
TU289239 lncRNA upstream 156772 1200382 ~ 1209029 (+) True G213048
TU289365 lncRNA downstream 133236 1508087 ~ 1510758 (+) True G213137
TU289370 lncRNA downstream 182887 1557738 ~ 1603566 (+) True G213142
TU289436 lncRNA downstream 334472 1709323 ~ 1709588 (+) True G213187
TU289442 lncRNA downstream 342083 1716934 ~ 1722077 (+) True G213193
TU289399 lncRNA downstream 350895 1725746 ~ 1726553 (+) True G213164
XM_022684405.1 mRNA upstream 14405 1340751 ~ 1351396 (+) True LOC103042715
XM_022684424.1 mRNA upstream 837738 519187 ~ 528063 (+) True hmgb2
XM_022684684.1 mRNA upstream 854242 506101 ~ 511559 (+) True scrg1
XM_022684499.1 mRNA upstream 897139 465499 ~ 468662 (+) True hand2
XM_022684403.1 mRNA upstream 1116070 229235 ~ 249731 (+) True fbxo8
XM_022684442.1 mRNA downstream 315226 1690077 ~ 1900094 (+) True nr3c2
XM_022684444.1 mRNA downstream 724639 2099490 ~ 2122451 (+) True prmt9
XM_022684465.1 mRNA downstream 1348747 2723598 ~ 2897529 (+) True znf827
XM_022684467.1 mRNA downstream 1348747 2723598 ~ 2895323 (+) False znf827
XM_022684466.1 mRNA downstream 1348747 2723598 ~ 2895292 (+) False znf827
TU289262 other upstream 16336 1340833 ~ 1349465 (+) False LOC103042715
TU289085 other upstream 854284 506425 ~ 511517 (+) False scrg1
XR_002651900.1 other downstream 1919077 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other downstream 1919077 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other downstream 1919077 3293928 ~ 3358194 (+) False LOC103044168
TU289889 other downstream 2313718 3688569 ~ 3688992 (+) True G213555
TU290045 other downstream 2969999 4344850 ~ 4363165 (+) False inpp4b

Expression Profile