RNA id: XM_022684403.1


Basic Information

Item Value
RNA id XM_022684403.1
length 1776
RNA type mRNA
GC content 0.54
exon number 6
gene id fbxo8
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 229235 ~ 249731 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACTGAGAGACTCTGAGCGGTGGAGGAGATTATAAACCTGACCGCGGATTCAGCCTGCTCGGGTTTTGAGCCCTTTTTGGAGCTTCTGGGGAAGAAATGCACGCTTTATCTGAGCTTGGGGGCTGAAGGACATTTCCACGCATCGGCTGCTGTGAACTGTTACGAATTTCGTCGCGGCGGCGGTGAAAATAAAGCCATAAAAACACAGGACTGCAGATGGGTCAGGGCTTGTGGAGGGTGGTGAGGaaccagcagctgcagcaggagTACAGCGAGCAGTGCTACCTCCAGCGGGAGCACCGGCGCAGGATGGGCCCCCTGCTGGTCGAGCCGCAGTCGCAGCCGCAGATGCGCCGGACGCTGCAGTGCCAGGTCCCCGGCTCGGACATCGGGCAGCTGCTGCGGGCACGCAAAGGCAAAGACCAGCAGGGCTTCATCGACCTGGAGATGCTGCCGCCCGAGCTCAGCATCACCATCCTGTCCTACCTGAACGCCACGGACCTGTGCCTGGCGTCCTGCGTGTGGCAGGACCTGGGAAACGACGAGTACCTGTGGCAGGGGCTGTGTAAATCCACTTGGGGTCACTGTTCCATTTACAACCGCAGACTTCCTCCCGGCTTCTCCTACAGaaaactctatgtctgtctgtctgtctgtctgcagggTATCACTTACCTCATGTCCAAAGGCATTCTGGTGGACCACCCGAAGGAAATTGCCAAGTTCATATTCTACACCAGAATGCTGAATTGGAAGATGCTGCGGATTTACCTTGATGAACGACGCGACGTTCTGGACGAGCTggtcacactacacaacttcaGTAACCAGTTCCTGCCCAACGCACTGAGAGACTTCTTCAGACACATCCACGCCCCGGAGGAGCGAGGGGAGTACCTGGAGACCCTCATCACCAAGTTCTCCCACCGATTCTGTGCCTGTAACCCCACACTGGTCAGGGAGGTGGGCCTGACGCCTGACGCTGTGTACGTACTTTGCTACTCGCTCATCCTGCTGTCCATCGACCTCAGCAGTCCGCACGTCAAGAACAAGATGTCCAAGCGTGAGTTCATCCGGAACACGCGGCGCGCGGCGCAGAACATCAGCGAGGACTTTGTGGGTCATCTCTATGACAACATCTATCTGATCGGCCACGTGGCCGCCTAACCCTCCGGCGCACGCGctcacgcacatacacacacacgcgcgcgcggcGCAGACGGGCCACGCTCGGGAAATGCAGCCGGCCAATCAAACACTCAGCCACGGCACTGATACGCATACTGCTCTGAAGCTAAAGCAGGGGTCGGAGGGGTCGACCGCCCCCACGCTGCGGTATAGAGGTGCTTATTAGGACAGGAAGTGCAGAGAACTACAGTAGACGAGTGGAAGTGGTTTAGAGGAAACCAGACGACGACAGCAGCGACTAAACTCAGCGCAAAGAGCTGCCTAGTgcttactgagagagagaggtagcaATGcacttaaccccttaaactgCTGCAGGCTGAATTATATACTGAATTATTATATACACCGTCACTATCACGAAGAAACATGTATCGTATACTATCTCCTAAACTAGAGCTTTACTGAAGAACGAACATCTAAACTTCACTtttaaatggaagtcagtgtaaaatgaTTTGGTTCAGattcattttggagcatttctgctCTATTTTTGCACGACAGCAgcaacatacagctctagaaaataataagagacaacttaaaaatgatgagtttctttaatttgaccaaattgaaaacct

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K10294 FBXO8; F-box protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289001 lncRNA upstream 58163 164499 ~ 171072 (+) True G212869
TU288998 lncRNA upstream 133411 91250 ~ 95824 (+) True G212866
TU289007 lncRNA downstream 2113 251844 ~ 253378 (+) True G212872
TU289005 lncRNA downstream 4293 254024 ~ 257592 (+) False G212871
TU289006 lncRNA downstream 4293 254024 ~ 257592 (+) True G212871
TU289066 lncRNA downstream 91576 341307 ~ 341509 (+) True G212919
TU289067 lncRNA downstream 97808 347539 ~ 347833 (+) True G212920
XM_022684547.1 mRNA upstream 60175 135827 ~ 169060 (+) True hpgd
XM_022684401.1 mRNA upstream 103383 27843 ~ 125852 (+) True glra3
XM_022684499.1 mRNA downstream 215768 465499 ~ 468662 (+) True hand2
XM_022684684.1 mRNA downstream 256370 506101 ~ 511559 (+) True scrg1
XM_022684424.1 mRNA downstream 269456 519187 ~ 528063 (+) True hmgb2
XM_022684405.1 mRNA downstream 1091020 1340751 ~ 1351396 (+) True LOC103042715
XM_007232149.3 mRNA downstream 1116070 1365801 ~ 1374851 (+) True tnip2
TU289085 other downstream 256694 506425 ~ 511517 (+) False scrg1
TU289262 other downstream 1091102 1340833 ~ 1349465 (+) False LOC103042715
XR_002651900.1 other downstream 3044197 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other downstream 3044197 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other downstream 3044197 3293928 ~ 3358194 (+) False LOC103044168

Expression Profile