RNA id: TU289067


Basic Information

Item Value
RNA id TU289067
length 295
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G212920
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 347539 ~ 347833 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtctgcacttgactatcaggaactccaccagcggagagcagtgtttggcgacagtcacagcgttgttacaccattccgtgttgatgtaaacacacacgcctccaccgcgggtcttcccggatagagccgcgcttctatcggctctgaacgcggttagcccggctagctgaatggcgctgtccggaatgttgtcgttaagccacgattccacaaaaaccaaagcacagcagtctctgaactcacgctgggtagttcgctggagtcggatgtagtccagtttattgtcaagggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289066 lncRNA upstream 6030 341307 ~ 341509 (+) True G212919
TU289005 lncRNA upstream 89947 254024 ~ 257592 (+) False G212871
TU289006 lncRNA upstream 89947 254024 ~ 257592 (+) True G212871
TU289007 lncRNA upstream 94161 251844 ~ 253378 (+) True G212872
TU289013 lncRNA upstream 106289 229245 ~ 241250 (+) False fbxo8
TU289068 lncRNA downstream 7219 355052 ~ 355464 (+) True G212921
XR_002651881.1 lncRNA downstream 128591 476424 ~ 488543 (+) True LOC111195947
TU289099 lncRNA downstream 195647 543480 ~ 544402 (+) True G212940
TU289100 lncRNA downstream 195647 543480 ~ 543985 (+) False G212940
TU289105 lncRNA downstream 232015 579848 ~ 581109 (+) True G212945
XM_022684403.1 mRNA upstream 97808 229235 ~ 249731 (+) True fbxo8
XM_022684547.1 mRNA upstream 178479 135827 ~ 169060 (+) True hpgd
XM_022684401.1 mRNA upstream 221687 27843 ~ 125852 (+) True glra3
XM_022684499.1 mRNA downstream 117666 465499 ~ 468662 (+) True hand2
XM_022684684.1 mRNA downstream 158268 506101 ~ 511559 (+) True scrg1
XM_022684424.1 mRNA downstream 171354 519187 ~ 528063 (+) True hmgb2
XM_022684405.1 mRNA downstream 992918 1340751 ~ 1351396 (+) True LOC103042715
XM_007232149.3 mRNA downstream 1017968 1365801 ~ 1374851 (+) True tnip2
TU289085 other downstream 158592 506425 ~ 511517 (+) False scrg1
TU289262 other downstream 993000 1340833 ~ 1349465 (+) False LOC103042715
XR_002651900.1 other downstream 2946095 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other downstream 2946095 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other downstream 2946095 3293928 ~ 3358194 (+) False LOC103044168

Expression Profile