RNA id: TU289099


Basic Information

Item Value
RNA id TU289099
length 365
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G212940
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 543480 ~ 544402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaataaataaataaataaataaataaataacccaaCAATTCTCACCTGATTTCCTCCCATCCTGTGGCACGGCCCGATCTCCACATTCCCACCGTTTGTGTGGCCCATGCTGTCTATACAGTAACTCGTCTCATATCCACGGATCTCTCCCCACTCCACGTTCTTGGGCGGTAAAGGATAGTGGATGGGAATATCGTAAGCAATTTCCTCCATGAACCACTTGAAGCTCTTGCAGCGATGCTCCTCTCTGAACTTCTTCAGAGGGCCGATGTCTCCGTAAGCCAGAGTGAGGGTTTCAGGACGACTGGCGTAGAAATAGTCCTTATACTCGTCCCACCAGACCTCCACCACACGCACGTAGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651881.1 lncRNA upstream 54937 476424 ~ 488543 (+) True LOC111195947
TU289068 lncRNA upstream 188016 355052 ~ 355464 (+) True G212921
TU289067 lncRNA upstream 195647 347539 ~ 347833 (+) True G212920
TU289066 lncRNA upstream 201971 341307 ~ 341509 (+) True G212919
TU289005 lncRNA upstream 285888 254024 ~ 257592 (+) False G212871
TU289105 lncRNA downstream 35446 579848 ~ 581109 (+) True G212945
XR_002651878.1 lncRNA downstream 43213 587615 ~ 592952 (+) True LOC111195934
TU289200 lncRNA downstream 401563 945965 ~ 946193 (+) True G213013
TU289201 lncRNA downstream 425297 969699 ~ 970030 (+) True G213014
TU289204 lncRNA downstream 429430 973832 ~ 974051 (+) True G213017
XM_022684424.1 mRNA upstream 15417 519187 ~ 528063 (+) True hmgb2
XM_022684684.1 mRNA upstream 31921 506101 ~ 511559 (+) True scrg1
XM_022684499.1 mRNA upstream 74818 465499 ~ 468662 (+) True hand2
XM_022684403.1 mRNA upstream 293749 229235 ~ 249731 (+) True fbxo8
XM_022684547.1 mRNA upstream 374420 135827 ~ 169060 (+) True hpgd
XM_022684405.1 mRNA downstream 796349 1340751 ~ 1351396 (+) True LOC103042715
XM_007232149.3 mRNA downstream 821399 1365801 ~ 1374851 (+) True tnip2
XM_007232150.3 mRNA downstream 821399 1365801 ~ 1374488 (+) False tnip2
XM_022684442.1 mRNA downstream 1145675 1690077 ~ 1900094 (+) True nr3c2
XM_022684444.1 mRNA downstream 1555088 2099490 ~ 2122451 (+) True prmt9
TU289085 other upstream 31963 506425 ~ 511517 (+) False scrg1
TU289262 other downstream 796431 1340833 ~ 1349465 (+) False LOC103042715
XR_002651900.1 other downstream 2749526 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other downstream 2749526 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other downstream 2749526 3293928 ~ 3358194 (+) False LOC103044168
TU289889 other downstream 3144167 3688569 ~ 3688992 (+) True G213555

Expression Profile