RNA id: TU289200


Basic Information

Item Value
RNA id TU289200
length 229
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G213013
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 945965 ~ 946193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agacatacctgtcaagtctcccgttttggccgggaaactaccgtattttactcctctttcccgccgtcctcccgtattagtattttcccgtaaatttcccgtattttattaaaataaaaaaatatatattattgaggatacagggcactgaccgctctgtgtctcttaaccaatcgtggagccggttcaaggagaaagtcccgcctttcaggagaaacagccaatcagc

Function

GO:

id name namespace
GO:1902531 regulation of intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651878.1 lncRNA upstream 353013 587615 ~ 592952 (+) True LOC111195934
TU289105 lncRNA upstream 364856 579848 ~ 581109 (+) True G212945
TU289099 lncRNA upstream 401563 543480 ~ 544402 (+) True G212940
TU289100 lncRNA upstream 401980 543480 ~ 543985 (+) False G212940
XR_002651881.1 lncRNA upstream 457422 476424 ~ 488543 (+) True LOC111195947
TU289201 lncRNA downstream 23506 969699 ~ 970030 (+) True G213014
TU289204 lncRNA downstream 27639 973832 ~ 974051 (+) True G213017
TU289212 lncRNA downstream 117900 1064093 ~ 1064400 (+) True G213025
TU289218 lncRNA downstream 125382 1071575 ~ 1071846 (+) True G213028
TU289221 lncRNA downstream 149417 1095610 ~ 1095853 (+) True G213031
XM_022684424.1 mRNA upstream 417902 519187 ~ 528063 (+) True hmgb2
XM_022684684.1 mRNA upstream 434406 506101 ~ 511559 (+) True scrg1
XM_022684499.1 mRNA upstream 477303 465499 ~ 468662 (+) True hand2
XM_022684403.1 mRNA upstream 696234 229235 ~ 249731 (+) True fbxo8
XM_022684547.1 mRNA upstream 776905 135827 ~ 169060 (+) True hpgd
XM_022684405.1 mRNA downstream 394558 1340751 ~ 1351396 (+) True LOC103042715
XM_007232149.3 mRNA downstream 419608 1365801 ~ 1374851 (+) True tnip2
XM_007232150.3 mRNA downstream 419608 1365801 ~ 1374488 (+) False tnip2
XM_022684442.1 mRNA downstream 743884 1690077 ~ 1900094 (+) True nr3c2
XM_022684444.1 mRNA downstream 1153297 2099490 ~ 2122451 (+) True prmt9
TU289085 other upstream 434448 506425 ~ 511517 (+) False scrg1
TU289262 other downstream 394640 1340833 ~ 1349465 (+) False LOC103042715
XR_002651900.1 other downstream 2347735 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other downstream 2347735 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other downstream 2347735 3293928 ~ 3358194 (+) False LOC103044168
TU289889 other downstream 2742376 3688569 ~ 3688992 (+) True G213555

Expression Profile