RNA id: TU289221


Basic Information

Item Value
RNA id TU289221
length 244
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G213031
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 1095610 ~ 1095853 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTCGCGAGAACTGTGACCTGCTTtccaacctttagttctaacagttctacaaggactactggttcattctttacaaactaacatacagacactctggcagaagctggaaagagaccgaatatgtctgtgaaagccagaaaacgagaaagagaaactaatcggcctgaaacatttattacactctgcaactgtagggggagcccacgagcacaaaatctcaatcctacctagtggagctttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289218 lncRNA upstream 23764 1071575 ~ 1071846 (+) True G213028
TU289212 lncRNA upstream 31210 1064093 ~ 1064400 (+) True G213025
TU289204 lncRNA upstream 121559 973832 ~ 974051 (+) True G213017
TU289201 lncRNA upstream 125580 969699 ~ 970030 (+) True G213014
TU289200 lncRNA upstream 149417 945965 ~ 946193 (+) True G213013
TU289223 lncRNA downstream 8818 1104671 ~ 1104922 (+) True G213033
TU289229 lncRNA downstream 29647 1125500 ~ 1125725 (+) True G213039
TU289234 lncRNA downstream 69185 1165038 ~ 1168691 (+) True G213044
TU289239 lncRNA downstream 104529 1200382 ~ 1209029 (+) True G213048
TU289251 lncRNA downstream 158678 1254531 ~ 1327947 (+) True G213056
XM_022684424.1 mRNA upstream 567547 519187 ~ 528063 (+) True hmgb2
XM_022684684.1 mRNA upstream 584051 506101 ~ 511559 (+) True scrg1
XM_022684499.1 mRNA upstream 626948 465499 ~ 468662 (+) True hand2
XM_022684403.1 mRNA upstream 845879 229235 ~ 249731 (+) True fbxo8
XM_022684547.1 mRNA upstream 926550 135827 ~ 169060 (+) True hpgd
XM_022684405.1 mRNA downstream 244898 1340751 ~ 1351396 (+) True LOC103042715
XM_007232149.3 mRNA downstream 269948 1365801 ~ 1374851 (+) True tnip2
XM_007232150.3 mRNA downstream 269948 1365801 ~ 1374488 (+) False tnip2
XM_022684442.1 mRNA downstream 594224 1690077 ~ 1900094 (+) True nr3c2
XM_022684444.1 mRNA downstream 1003637 2099490 ~ 2122451 (+) True prmt9
TU289085 other upstream 584093 506425 ~ 511517 (+) False scrg1
TU289262 other downstream 244980 1340833 ~ 1349465 (+) False LOC103042715
XR_002651900.1 other downstream 2198075 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other downstream 2198075 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other downstream 2198075 3293928 ~ 3358194 (+) False LOC103044168
TU289889 other downstream 2592716 3688569 ~ 3688992 (+) True G213555

Expression Profile