RNA id: TU289251


Basic Information

Item Value
RNA id TU289251
length 308
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G213056
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 1254531 ~ 1327947 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctctaaaccatcactgattggtggaaatttcacactagacctcaagcagcttggactgtgtgtctctccactcttcctccagactctgctcccttgatttataaatgaaatgtaaaattaactgatgatcagtgatggtttggagagacatgtctgtcatctgctggtgttgatccactgtgttttgttgtcaagtctaaagtcagtgcagtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289239 lncRNA upstream 45502 1200382 ~ 1209029 (+) True G213048
TU289234 lncRNA upstream 85840 1165038 ~ 1168691 (+) True G213044
TU289229 lncRNA upstream 128806 1125500 ~ 1125725 (+) True G213039
TU289223 lncRNA upstream 149609 1104671 ~ 1104922 (+) True G213033
TU289221 lncRNA upstream 158678 1095610 ~ 1095853 (+) True G213031
TU289273 lncRNA downstream 18611 1346558 ~ 1363059 (+) True G213073
TU289365 lncRNA downstream 180140 1508087 ~ 1510758 (+) True G213137
TU289370 lncRNA downstream 229791 1557738 ~ 1603566 (+) True G213142
TU289436 lncRNA downstream 381376 1709323 ~ 1709588 (+) True G213187
TU289442 lncRNA downstream 388987 1716934 ~ 1722077 (+) True G213193
XM_022684424.1 mRNA upstream 726468 519187 ~ 528063 (+) True hmgb2
XM_022684684.1 mRNA upstream 742972 506101 ~ 511559 (+) True scrg1
XM_022684499.1 mRNA upstream 785869 465499 ~ 468662 (+) True hand2
XM_022684403.1 mRNA upstream 1004800 229235 ~ 249731 (+) True fbxo8
XM_022684547.1 mRNA upstream 1085471 135827 ~ 169060 (+) True hpgd
XM_022684405.1 mRNA downstream 12804 1340751 ~ 1351396 (+) True LOC103042715
XM_007232149.3 mRNA downstream 37854 1365801 ~ 1374851 (+) True tnip2
XM_007232150.3 mRNA downstream 37854 1365801 ~ 1374488 (+) False tnip2
XM_022684442.1 mRNA downstream 362130 1690077 ~ 1900094 (+) True nr3c2
XM_022684444.1 mRNA downstream 771543 2099490 ~ 2122451 (+) True prmt9
TU289085 other upstream 743014 506425 ~ 511517 (+) False scrg1
TU289262 other downstream 12886 1340833 ~ 1349465 (+) False LOC103042715
XR_002651900.1 other downstream 1965981 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other downstream 1965981 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other downstream 1965981 3293928 ~ 3358194 (+) False LOC103044168
TU289889 other downstream 2360622 3688569 ~ 3688992 (+) True G213555

Expression Profile