G213437


Basic Information

Item Value
gene id G213437
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 3358270 ~ 3384873 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU289744
TGCATTCTCCATTCTGATGTGATGATAAAAGCCATGGGTAGGTTTTTTTATTGCTAATTTCAGGCTATTTCATTCTTGTATTGCATTGAATTTTGTTATTATGTTAGGTTAAGTTTTTACCGGactgtttttctttaaatgatTTTGAAAGATTTGTAATTTACTTGTATTTACAGCAACAATCAAACTAACTAAAATTATCTCATTTTTTAGAAATGGCAGTGTTAACATTATTACtatcattaatattataattatttgtgCAAGGATTGTTCCCAGACATTAGCAACCACGCAACACACATCAGGGACTTATtcatacttttatatatttactgtgtgtAGATGCTAAATGTTGATACATTGTCATTTAAATcaaacaagtacatttttgtctgtatactaaaatatttaaactctgtctaaatgtatttgaatatttttaaatcaatataatgtatgtgtttgtgctgTGGTTTTATAACTTATGTAGGGAAATTCATAGGGACTAAGAAGGTTTTTCACATacggatgcaccaaatattctgAACCTAAAATGTGACCAAAAAGGGCACTATTTTACTTACATAAATAAGTAAGACCAAAAAGTGCAATGATATGATGATTTGATATATGCTTTTTCTttgacagaatatcaagacaaaatacacaatttaattTCTGCAATACTTAAAAATTGCTAAATGATTGAAACCTACAAAAAACTTTGatattttacttcttttattttattttattttatttatttgctaattTGAGAttcagtcagaaaaaaaaaaaaattggattacATATGGGCAGAGTCTCCGTCAAGTAATTGAAGAAGTTTTGACCAATCAAATAAGTATGTCTAATTAGagtatgcttttattttttgtatactttatttgtatttttcaacCTCTGTGAAGAAACAGGATGCATGGGAATGTGTGTTTGACTTTTTGCTGTTTATCATTAattgttatgttattattattaacttaatGATTATTAGAAGCAATCTGAACCTGATCTGTTGCTGTAAACCTTCATTAAAAATTATTCCACTGCTGTGTTTTATATGCTGCTGGTAGGCAGTCTGCTGTAGGTTGAGCCACTATAAAAATGCCTCCATGCTTTACGGCTCATAGGAAGTAGTTTAGACAGTAAGAGCTCTCTCAGCTTTCTTTATGAGGCTTCTCCTCTTCTCCAGACAGTGTGGGAAGATCCTGCTCAACATCACTGCTACTGATTTTATAGAACAGGATCTTAGGTTAAATTTACACAGCAGGTAGGATAGCCCAAATCCCATTTTCccaccaaataaaataaaaaaacttgatGCAGAGAATGGCTCCATTGCACATGTACATCAGTTTATGAGCATAAACTAATCAAATAAATTACACATATGTGTTGCacatgtgaacatagccttagatGATCCAGAAACTGCATGATTTAACACTGCCTGATCAAAAAAAAAGGGTCCCCActtggatttaagtaagtaaatgatgtggagtTGTTTGATGCTgtagttggtctgcaggtttaggttcagcaacagtatgtgctgaaagaatgagatcagctgactacctgaatatactgaatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289744 True 1622 lncRNA 0.31 2 3358270 3384873

Neighbor

gene id symbol gene type direction distance location
znf827 znf827 coding upstream 460741 2723598 ~ 2897529 (+)
prmt9 prmt9 coding upstream 1235819 2099490 ~ 2122451 (+)
nr3c2 nr3c2,LOC107598757 coding upstream 1458176 1690077 ~ 1900094 (+)
tnip2 NA coding upstream 1983419 1365801 ~ 1374851 (+)
hmgb2 hmgb2,hmgb2a,LOC100707400,LOC102792727,LOC107752228 coding upstream 2830207 519187 ~ 528063 (+)
LOC103022278 NA coding downstream 70075 3454948 ~ 3475096 (+)
LOC103021981 NA coding downstream 94611 3479484 ~ 3499830 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding downstream 255680 3640553 ~ 3661294 (+)
rnf150 rnf150,LOC107746087,LOC107729769,LOC107700883 coding downstream 1046622 4431495 ~ 4484033 (+)
ucp1 ucp1,LOC107703842,LOC107700810 coding downstream 1215593 4600466 ~ 4609805 (+)
G213440 NA non-coding upstream 57393 3299377 ~ 3300877 (+)
G213435 NA non-coding upstream 126895 3231017 ~ 3231375 (+)
G213434 NA non-coding upstream 132899 3225148 ~ 3225371 (+)
G213433 hhip non-coding upstream 165807 3191688 ~ 3192463 (+)
G213422 NA non-coding upstream 203509 3114773 ~ 3154761 (+)
G213521 NA non-coding downstream 57057 3441930 ~ 3443093 (+)
G213551 NA non-coding downstream 238821 3623694 ~ 3688092 (+)
G213556 NA non-coding downstream 309198 3694071 ~ 3694372 (+)
G213594 NA non-coding downstream 360646 3745519 ~ 3745724 (+)
G213596 NA non-coding downstream 392321 3777194 ~ 3777472 (+)
LOC103044168 NA other upstream 76 3293928 ~ 3358194 (+)
LOC103042715 NA other upstream 2006874 1340751 ~ 1351396 (+)
scrg1 NA other upstream 2846711 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 3108539 229235 ~ 249731 (+)
G213555 NA other downstream 303696 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 515369 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 1013712 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 1126066 4510939 ~ 4590452 (+)
G213891 NA other downstream 1788196 5173069 ~ 5174096 (+)

Expression


Co-expression Network