RNA id: TU289744


Basic Information

Item Value
RNA id TU289744
length 1622
lncRNA type sense_over
GC content 0.31
exon number 2
gene id G213437
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 3358270 ~ 3384873 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCATTCTCCATTCTGATGTGATGATAAAAGCCATGGGTAGGTTTTTTTATTGCTAATTTCAGGCTATTTCATTCTTGTATTGCATTGAATTTTGTTATTATGTTAGGTTAAGTTTTTACCGGactgtttttctttaaatgatTTTGAAAGATTTGTAATTTACTTGTATTTACAGCAACAATCAAACTAACTAAAATTATCTCATTTTTTAGAAATGGCAGTGTTAACATTATTACtatcattaatattataattatttgtgCAAGGATTGTTCCCAGACATTAGCAACCACGCAACACACATCAGGGACTTATtcatacttttatatatttactgtgtgtAGATGCTAAATGTTGATACATTGTCATTTAAATcaaacaagtacatttttgtctgtatactaaaatatttaaactctgtctaaatgtatttgaatatttttaaatcaatataatgtatgtgtttgtgctgTGGTTTTATAACTTATGTAGGGAAATTCATAGGGACTAAGAAGGTTTTTCACATacggatgcaccaaatattctgAACCTAAAATGTGACCAAAAAGGGCACTATTTTACTTACATAAATAAGTAAGACCAAAAAGTGCAATGATATGATGATTTGATATATGCTTTTTCTttgacagaatatcaagacaaaatacacaatttaattTCTGCAATACTTAAAAATTGCTAAATGATTGAAACCTACAAAAAACTTTGatattttacttcttttattttattttattttatttatttgctaattTGAGAttcagtcagaaaaaaaaaaaaattggattacATATGGGCAGAGTCTCCGTCAAGTAATTGAAGAAGTTTTGACCAATCAAATAAGTATGTCTAATTAGagtatgcttttattttttgtatactttatttgtatttttcaacCTCTGTGAAGAAACAGGATGCATGGGAATGTGTGTTTGACTTTTTGCTGTTTATCATTAattgttatgttattattattaacttaatGATTATTAGAAGCAATCTGAACCTGATCTGTTGCTGTAAACCTTCATTAAAAATTATTCCACTGCTGTGTTTTATATGCTGCTGGTAGGCAGTCTGCTGTAGGTTGAGCCACTATAAAAATGCCTCCATGCTTTACGGCTCATAGGAAGTAGTTTAGACAGTAAGAGCTCTCTCAGCTTTCTTTATGAGGCTTCTCCTCTTCTCCAGACAGTGTGGGAAGATCCTGCTCAACATCACTGCTACTGATTTTATAGAACAGGATCTTAGGTTAAATTTACACAGCAGGTAGGATAGCCCAAATCCCATTTTCccaccaaataaaataaaaaaacttgatGCAGAGAATGGCTCCATTGCACATGTACATCAGTTTATGAGCATAAACTAATCAAATAAATTACACATATGTGTTGCacatgtgaacatagccttagatGATCCAGAAACTGCATGATTTAACACTGCCTGATCAAAAAAAAAGGGTCCCCActtggatttaagtaagtaaatgatgtggagtTGTTTGATGCTgtagttggtctgcaggtttaggttcagcaacagtatgtgctgaaagaatgagatcagctgactacctgaatatactgaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289750 lncRNA upstream 57393 3299377 ~ 3300877 (+) True G213440
TU289736 lncRNA upstream 126895 3231017 ~ 3231375 (+) True G213435
TU289735 lncRNA upstream 132899 3225148 ~ 3225371 (+) True G213434
TU289734 lncRNA upstream 165807 3191688 ~ 3192463 (+) True G213433
TU289722 lncRNA upstream 203509 3114773 ~ 3154761 (+) True G213422
TU289843 lncRNA downstream 57057 3441930 ~ 3443093 (+) True G213521
TU289881 lncRNA downstream 238821 3623694 ~ 3688092 (+) False G213551
TU289882 lncRNA downstream 238821 3623694 ~ 3688092 (+) True G213551
TU289890 lncRNA downstream 309198 3694071 ~ 3694372 (+) True G213556
TU289936 lncRNA downstream 360646 3745519 ~ 3745724 (+) True G213594
XM_022684606.1 mRNA upstream 30140 3293928 ~ 3328130 (+) False LOC103044168
XM_022684465.1 mRNA upstream 460741 2723598 ~ 2897529 (+) True znf827
XM_022684467.1 mRNA upstream 462947 2723598 ~ 2895323 (+) False znf827
XM_022684466.1 mRNA upstream 462978 2723598 ~ 2895292 (+) False znf827
XM_022684444.1 mRNA upstream 1235819 2099490 ~ 2122451 (+) True prmt9
XM_022684937.1 mRNA downstream 70075 3454948 ~ 3475096 (+) True LOC103022278
XM_022684938.1 mRNA downstream 70075 3454948 ~ 3475096 (+) False LOC103022278
XM_022684472.1 mRNA downstream 94611 3479484 ~ 3499830 (+) True LOC103021981
XM_022684485.1 mRNA downstream 255680 3640553 ~ 3661294 (+) True smarca5
XM_022684486.1 mRNA downstream 255680 3640553 ~ 3661294 (+) False smarca5
XR_002651900.1 other upstream 76 3293928 ~ 3358194 (+) True LOC103044168
XR_002651901.1 other upstream 76 3293928 ~ 3358194 (+) False LOC103044168
XR_002651902.1 other upstream 76 3293928 ~ 3358194 (+) False LOC103044168
TU289262 other upstream 2008805 1340833 ~ 1349465 (+) False LOC103042715
TU289085 other upstream 2846753 506425 ~ 511517 (+) False scrg1
TU289889 other downstream 303696 3688569 ~ 3688992 (+) True G213555
TU290045 other downstream 959977 4344850 ~ 4363165 (+) False inpp4b
TU290046 other downstream 959977 4344850 ~ 4363165 (+) False inpp4b
TU290072 other downstream 1013712 4398585 ~ 4428962 (+) True G213715
TU290305 other downstream 1788196 5173069 ~ 5174096 (+) True G213891

Expression Profile