CI01000009_06124385_06127298


Basic Information

Item Value
gene id CI01000009_06124385_06127298
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6123786 ~ 6128578 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_06124385_06127298.mRNA
ATTTACCATCAAGCACCTTTAAACAGCCCTTCAGCATAATCAAACACAAGGATCAAGTTCTCTCACTTGAAAAACACAGATGTACTAGCGCACACTCAAAGTGCCACTGAGCTACTTGAGGAGGTAAGGGGATTGTGGGTAAAGGATTTGTAGTGTGTTGCAAGTAGGCAATAAGAGATCTACATATCCTTCAGAAATGCATCCACGGTTACTACTAACGTTAATGTCTGTCAGCAAAGATGCTGCCAAGAGCCTCTTGTGTAGAAGGAGACTTGATTGACACTCGCAAGTTATTTGCTTGTCAGATTATCACTCATGGGAGTGACGTGTTGGAGTTGACTTACACATTTATTCATGAAAAGAGCCATAGATGTGTGAAAACCAACCATTGTTTATGCGTTTCAGTGTGCGTCTAAATTTGTAACTGTAGACAGACAGATAAAACGGAACCTCTGGGGTTTAAAATGTTTAAATGTGATAACTTATTCATTCATCAGCAGGGATGTGGTTTACATTTGTTGTCTATGTGGATTTTGTGACAGATCTGTTTAAGCTATACCCATCTTTGGATCTATGAAGAGTGAAAATAAGTTTGGTTCTCATTTCATTTAGGGTGCTTTCACATTAGCACTTTTGGTGCGCACCCGGGTTCGATTGACGTCAGAGTTCGGTACGTTTGGATGATGTGAACACTGTCTTCTGATCTCGGGTGCGCACCCGCGAACCGTACCCGAGTCCGCTTAAAAAGGGTGGTCTGGAGTACGGTTTAAGTGAACTCCGGTACGGTTCGCTTCTGATATGAACGCAAACGTACCAAATTGCGGAAGTGAACCGCTATTAATGCCGTATTATTTGATAAAAATGTGTGTTTGGGTGTGTGTTTCACTCACTTTCCCGACGAGCGTGACTGATGTGCTGCAAGCAGAGAGCTGTAGTGTCTCATTTCTGCTCGCCTTCAGCGTTCTACATTCGCAGCAGATAGACGCAAGTGCCGTTATGAACAAAACCAACAGTTCAAAAACAAAGATATAAAAGTGGGGAGAGCAACGTTATGCATTTTGCCACCTTCTCCTGTGCCGTCGTTACTAAGCAACGGAGTAAACAGCTGCTGGTTTGATGACGCAAACAAACCACGGGTCAGACCCAAATAATATAATATGAACACAGTCCAGTGGGGGCAGGGGGAAGGGGGAGCAATCGAACTCGGGTTCGGTCCAGGCAATCGAACCAAGTGTGAAAGCACCCTTAGAGACTTAAAATAATAAATGTGAAAAGAAGAAATGTGCCACTTTACTTTGAGGCACTTCTTTGGAAAACAATTCTATGGCCTTGTTCCACATGATGACATATCCAGACAAAACAAAGGATTCGATGTTCACTATGTGCGTATTTCCGCGCTCTGTCCCCACATAAAGCCATTTACTTTGAAATGGAAGATGACAAAACGTGATCCTAAAAGAGAGATGGAAAAAGGAGGAATTATATTTGTGCAAGAGAAGAGATTACACAGGGTATGTCAGCATCATATTAAACAGTTGGAAGTAACACTTGTCACACTTGTTCATGGTGTTGCCTGGTTTGGCTCTGCTCTAAGGCTCATGCCAGTCAAACGTCAGCCCCTCTTGGGTACACTTGTGTGTATTTTGGGATGCAGCAATTAATTGGAACACGATTACCTCAAGACAAACTGGAGCTAATGAGACATGAATGAGATGAGAGGAGACACTGACTCTTAGACTGACTCTGTTTTCTCTTTTCCAGCAAACCACGTATACTGTATGACATAAAATGACTCCCCCATGCTGGTGTGTTTATGTGTGTTTGTTTCCATAGCGTGCCACTGTCTCCAGTGTCATCAAAAGGTTAAAAGAAAAGAGTAAGATAATATTTGGCTGATGCTCACTACGTTAATTATGAAATAATTACAAAATTAGGCAGCCTATTAGCACTCTGATTTATCTCTGCTACTGTCACAACAGAAACTCTCCAGAGAATACGTCTAATAACACGCCACATTTTTATACACATGTAAACAGGGTTTAGCATTAAAACTAAGGTGTGCACTTCATATTATTAATGCTAAACATCACATTTTATGTTTCAGTCATTAAAGATTATTTGTGGTTAACTGTGGCTCTCTAACATGTCAAATTCTGGCTCAACCATTGTTGTGAGTTTGGGGCGAGACTACCTGTTTGTCCAAACAAAATGGAATACGAGGACAAGGTTTCAGAAACATCATTACTTAAATGCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_06124385_06127298.mRNA True 2260 mRNA 0.41 3 6123786 6128578

Neighbor

gene id symbol gene type direction distance location
CI01000009_06072320_06072613 NA coding downstream 49404 6072173 ~ 6074382 (-)
CI01000009_06046712_06060022 NA coding downstream 63344 6045874 ~ 6060442 (-)
CI01000009_05994558_06000514 NA coding downstream 123272 5994558 ~ 6000514 (-)
CI01000009_05977117_05981366 CDC25C.L, RAB5D, RAB5D.S, RAB5B coding downstream 141088 5976113 ~ 5982698 (-)
CI01000009_05949578_05961385 ARMC8 coding downstream 162401 5949578 ~ 5961385 (-)
CI01000009_06214501_06218695 TLR20.2, TLR20F coding upstream 85717 6214295 ~ 6218832 (-)
CI01000009_06228655_06235149 NA coding upstream 99100 6227678 ~ 6236617 (-)
CI01000009_06237366_06242607 NA coding upstream 108580 6237158 ~ 6242627 (-)
CI01000009_06246303_06248176 SLC10A2 coding upstream 116992 6245570 ~ 6248176 (-)
CI01000009_06250463_06251001 NA coding upstream 121708 6250286 ~ 6251001 (-)
G54077 NA non-coding downstream 82119 6041458 ~ 6041667 (-)
G54068 NA non-coding downstream 100959 6022613 ~ 6022827 (-)
G54065 NA non-coding downstream 104430 6019046 ~ 6019356 (-)
G54032 NA non-coding downstream 130382 5993185 ~ 5993404 (-)
G54137 NA non-coding upstream 75833 6204411 ~ 6204799 (-)
G54156 NA non-coding upstream 337396 6465974 ~ 6530279 (-)
G54387 NA non-coding upstream 406516 6535094 ~ 6535317 (-)
G54411 NA non-coding upstream 441047 6569625 ~ 6569834 (-)
G54417 NA non-coding upstream 445332 6573910 ~ 6574168 (-)
G53515 NA other downstream 618538 5502395 ~ 5505248 (-)
G52828 NA other downstream 1892317 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 2861829 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 3224379 2883688 ~ 2893975 (-)
G52410 NA other downstream 3561253 2551724 ~ 2562533 (-)
G55814 NA other upstream 2297243 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 2729574 8856310 ~ 8860563 (-)
G59097 NA other upstream 6159639 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 7846810 13975099 ~ 13978614 (-)
G59490 NA other upstream 7904986 14033564 ~ 14037873 (-)

Expression


Co-expression Network