CI01000009_05994558_06000514


Basic Information

Item Value
gene id CI01000009_05994558_06000514
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5994558 ~ 6000514 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_05994558_06000514.mRNA
TGAGATTTCCACATGTGTTCAGAGTGATGCCAGTAAACAGCAAGAGAGAGCAAGGAAAAGATGCTGCTGTGAGTTTGACAATGTTTATGTTCTGTTGGGTTTCATTTAAACAGGATCAGCTCAGATCCGTGAACTTTAAAAAGGCCAAATATGGCAGTGAAAATATTATACCACTAACAAAAAGTGCTAATAGTATCACGTACTATGGTCATGTGCAGGGGACCAATGACAGCAGTGTGGTCAGTAAGGTGTCAGCAGCGGCACAGGGCTACTTCCATGATGACTTCCTCAAGCATTTTGTGTGCAAGGTGTCAAGAAGAGCTCCACTAATTAATAGAGGTTATTATGTGCGCTGGAAAGCAGTTGATCATTGTATGAATCAGTTTCTCCATGCCGCAAAATCCTGCTCGAGGAGACAGATTCTGTCACTAGGAGCAGGGTTTGACTCCCTGTTTTTCCGGCTGCATGCAGAAGGAGCCCTTGGAGGTGTCACAGTTTTTGAGGTTGACTTTCCAGAAGTTGCCCGACGCAAGTCTGACTTGATCAACAGCAATGCTTGTCTAAAAGACGCGTTGCCAGATTGGGAGCCTGTCTCAAATCAGCAGACTAGTAATGCTGTGTTCATCAGAAGTGGTCATTATAATCTCATTGGTGTGGATGTCAGGAAGGAGCAGAAGGTGGAGGCGGCTCTGAGCAGAGCTGGGCTGCAGTGGGATGCTCCCACACTTGTCTTGTCAGAGGTGGTGCTGACTTATATGGAAACACAATGGTCAGATGCTGTGATTGGCTGGACTGCCAAGCTCTTTCCACAGTCTATGTTTGTGATGTATGAACAGATCCACCCAGATGATCCATTTGGCAGGATCATGCAGAACCACTTCCTGAAGCTCAACTCTACCATACATGCCCTCAAACAATATCCACACACTGTCGCTCAGACACAGAGATTCATACAGAAGGGCTGGGAAAAATGTGTCTGTCTGGATATGAACCAGTTCTACTTTGAACTTCTTCCTGAAGATGAGAGGCAGAGAGTCGAGAGACTGGAGCCTTTTGATGAGTTTGAGGAATGGCACCAGAAATGTTCTCACTACTTCATCCTTTCAGCCTCCAAAGGTTCTGTGACCAATCAAGCCCTTCTTACACTACCAAAGTGTATAGAGGCTGTTGGTATGGCCTCTGCTGTACTGGCCCCTGGAAACATCCTTCTCACCGGAGGCTGTGGGAGAAGCGGAAGAGACACCGTAGCGAGAGTCCTGATCAAAGAGCAGGATGGCTGGAAATGTGCCTGTGTGGAGGCTCATGGAGACGCAGTGGTGGGTCTTTATCAGACGTTGACCTCTATCCCTGGTGGTGGAGTGGTCCTCTTTGGCGGCAGAACTTCTCCACTCAATCCAACAGGCAGCATTGTGTGGGTGACCTTTGACCTTGGTGATCAGCAAAGTTCCGTACAGCTGTCATTTAAGAACATGGTTTGTACAGGCATTGGTCCAAAGCCACGATGGAGACACACATCGACCTTAATATGTTATAATGCTTGTCCCTATGGAGGGGGGCTTGTGATATTTGGAGGTTTAGGGAAAGGAGGGAGACCTCTCGGTGATACTTTTTACCTAAGACCAACATCATCAGGTTTCTGCTGGGAGACAAAGAATTTACATCCACCTCCAGTGCCCAGATATTCCCACTCAGCCCATGTAATTAATGAGAAGTTGGTTGTGGTTGGTGGAGTTTGGCTTCAGGCTGATGGAGTACCAGGAGTTGCTGTAATAAATCTGAACACTGGGGGTTGTGTGGAGATCCAGCTGGATACCTCATCTGTGCCTTGGCCTCTTATGCTGCATTCGTTCTGCTCTGAGCTGCTGGACCCTGAGGGGACTGAGATGGTGCTCATTGGTGGAGGAGGAAACTGTTTCTCATTTGGAACACACCTCAATCTCCACCCTGTAACTGTGGATCTAAGTCCATTACTTTGCTATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_05994558_06000514.mRNA True 1982 mRNA 0.47 13 5994558 6000514

Neighbor

gene id symbol gene type direction distance location
CI01000009_05977117_05981366 CDC25C.L, RAB5D, RAB5D.S, RAB5B coding downstream 11860 5976113 ~ 5982698 (-)
CI01000009_05949578_05961385 ARMC8 coding downstream 33173 5949578 ~ 5961385 (-)
CI01000009_05844758_05855489 IDH1 coding downstream 138614 5844128 ~ 5855944 (-)
CI01000009_05798886_05836104 PLEKHM3 coding downstream 156128 5797882 ~ 5838430 (-)
CI01000009_05784097_05785842 FZD5 coding downstream 208716 5784065 ~ 5785842 (-)
CI01000009_06046712_06060022 NA coding upstream 45360 6045874 ~ 6060442 (-)
CI01000009_06072320_06072613 NA coding upstream 71659 6072173 ~ 6074382 (-)
CI01000009_06124385_06127298 NA coding upstream 123272 6123786 ~ 6128578 (-)
CI01000009_06214501_06218695 TLR20.2, TLR20F coding upstream 213781 6214295 ~ 6218832 (-)
CI01000009_06228655_06235149 NA coding upstream 227164 6227678 ~ 6236617 (-)
G54032 NA non-coding downstream 1154 5993185 ~ 5993404 (-)
G54000 NA non-coding downstream 242393 5751940 ~ 5752165 (-)
G53997 NA non-coding downstream 247770 5746575 ~ 5746788 (-)
G53988 NA non-coding downstream 263694 5730634 ~ 5730864 (-)
G53916 NA non-coding downstream 397880 5585039 ~ 5596678 (-)
G54065 NA non-coding upstream 18532 6019046 ~ 6019356 (-)
G54068 NA non-coding upstream 22099 6022613 ~ 6022827 (-)
G54077 NA non-coding upstream 40944 6041458 ~ 6041667 (-)
G54137 NA non-coding upstream 203897 6204411 ~ 6204799 (-)
G53515 NA other downstream 489310 5502395 ~ 5505248 (-)
G52828 NA other downstream 1763089 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 2732601 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 3095151 2883688 ~ 2893975 (-)
G52410 NA other downstream 3432025 2551724 ~ 2562533 (-)
G55814 NA other upstream 2425307 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 2857638 8856310 ~ 8860563 (-)
G59097 NA other upstream 6287703 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 7974874 13975099 ~ 13978614 (-)
G59490 NA other upstream 8033050 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037178 lcmt2 coding NC_007120.7 CM002893.2 27720267 ~ 27734078 (+)
bowfin (Amia calva) AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 misc CM030137.1 CM030137.1 1599696 ~ 1606031 (+)