CI01000009_06228655_06235149


Basic Information

Item Value
gene id CI01000009_06228655_06235149
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6227678 ~ 6236617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_06228655_06235149.mRNA
ATTTTAGATGTATTTCCTTAGGGATTGTTAAAGCGCAACACATCCAGATTATAAATAATTAACAAATTAGAGAAAAAAAAAAAAAAACTTCCTTACAGGTTTATTTTCTCACTTTGTTTCTCTGGATTTCCACATTACATGCAATTCAAAGGGAAAGAAGAGAACTGCACACAAAATCCTTACAAGTCACACAATTTCTGAAACCTGACACTCAAACACCAGAACCACACACAAAATCTGCAAAACCATACACTAATTCTCAGCCTTCGATTCAGTTTTCAATTTCATAAAACACTTTTTGCAAAACACAACACACAATTCTCTATTTAACACACAAAAATCTAACAGGAAGTATCTTGATTTCCTTTTTCAAACACAACCATTGTTTCTGTCCAACTACAAATGGTTGATGTATTTCTTTTCTTTCGTACTTTGTAATACTGTATTCACAACCACAAATGCTTACAGTAAAAAAAAATAATAGTTTGGTTTCAATCTTGCTTTCGTGTTTACCGTGAATTTTTCAACATCTCTCTGCCAATTACTTTCAATCTTGTACAGAAATGTACATAGGAGCTCATGAAAGAAGAGCTTTAGGTTTTGAATAACTGTGTGTATATGAATATGATATATCCAAAAATAGAATATCAAGGCAAAGGTGTTTGCAACATAAGACAAATGTTTGCTTTTGAGGTGTGTTTGTGATATTTTGAATGCGGTGCTTCATTTTGCAAGAGATGTGAGGCATTTTGCATTTTGTGTGTGCATTTCTTGGATTTGTGTGTAAAGTTTTGAAAAAAAAAAGGCAAAGTTTTGAAAATGTGTGTAAGCAGCAGAAAAAAAAAAACTGTAAAAAACATGATTAGACACACCTGCTAAGAATGACTCATAAATACATATTTCATTTACAGTATTTTTATGTACCTGACGCCTTCAGCTTCCAGACTTTCCATCCTCAGACAGTTCGGGCACAAGAAGGCCAGGTGCTTACGCTCTTGATGAAACTTACAGCCCCAGCACCAGTGCATCACTTCCTTCATATGGGCAGCCATGTTACTGAATGAGGACACCTTCTCCAGTGACTTCAAGAACTTCTTCTTCTGACAGACTGCAATCTGTGGCTTCAGAGACAGCTTTGGGAAGAATGCACTAATATTAACCTACGACTGCAATTCTATGAATATGTCAGTCAGCATATTATGTTTCTCAAAAACATACTTCAGCTAGATCTGTCATATGACAACATCCCAGGACTAGCCACTGACATCAGATCACTCTAATCCAAGCTGCTGATTCTTTTGGCATTTTCAAGAAACGGCAGAAGACTTTTTTTCGGCAACACTTGACCCATCAATACTAACACTTACTATTTTATATCTATTAAAAACTTTAAAATTAAAGGGATAGTTCACCCAAAATGGAAACTGTTATCATTTACTCACCATGTTGTTCAGATGTCCTACTAACTATGAGAGCCAGATACCTGATTTGCAAAGAAATAGTTAGCTCTGGACTCCTAAAGTTTGACGATAAACCAGAAAACTACTGGGCCTGGAAAGCTTCCTTTGTCAACTCCACCAGTGATCTGAACTTAACCCCCAGGGAAGAGTTAGATTTACTAACTAAATGGCTGGGACCACAGTCTGCAGAGCAGGCCAAACGCATCCATGCAGTTCACATCAATAATGCCAGTTCAGGACTCAAAATAGTGTGGCAGAGATTGGAAGAATGTTATGGATCAGCAGAAATAATAGAAAATGCTCTGCTTAAGAAGTTAGAGGAGTTTCCAAAAATATCAAACAAGGACAACAAGAAGCTGTGGGAGCTAGGGGACCTATTGCTAGAGCTGGAGGCAGCTAGGAAAGATGGATTCTTACCTGGACTATCTTACCTCAACACACCACGGGGAGTCAATCCCATCGCACAGAAGCTCCCCTATAACCTTCTGGAGAAATGGATCTCAGTTGGCTCTAAATATAAAGAAGACCATCAGGTTCAATATCCCCCCTTTTGCGTCTTTGTAAAGTTCATCAGAGACCAAGCAAAGACAAGAAACGACCCCAGCTTTGCCGAACTGACCATGAGTGGTTCAGTCAAGATGGATAAACCTCTGAAATCCACTAAACCATCTGTGTTCACCAGGAAGACTGAGGTTTCTTCAGAAAGTGGTGATAAGCAAAACATTATGGAGAAAAAGATGGCTTGTGGCATTCGCAACAAGACCTTAGATGTACGAAAAGCATACCTCAAAGAGAAACATATATGTTTCAAGTGTTGTGCCTCAACAAGTCACCTCACCAAGAACTGTGACAAATCTGTGCAGTGCAAAGAGTGCAACAGCAACAAACACTTAGCGGCACTTCATCCAGGGCCAGTGCCATGGAAGTCATTGAGCTCTGCTGTTAAGGAGGATCACGGTGGGGAGCAGCAGGAAGATGAGACTCCAGAGGTTATGTCAAAGTGTACAGAAGTCTGTGGGGACTCATTTGGCTCCCGATCATGCGCCAAAATATGTTTGGTCCGAGTCTACCCTGCAGGACAACGAGAGAAAGCTGTTGAAGCATACGCTGTCCTTGATGAGCAGAGTAATAAGTCCCTGGCCAAGACCGAGCTATTCGACCTTTTGGGCATTGGAGAAAATGCTGCACCATACACCCTTAGAACATGCTCAGGGATTGTGGAAACATCAGGACGACGTGCAAGCAACCTCATAGTTGAGTCAATAGATGGAAATGTACAGATCTCGCTTCCATCACTTATAGAGTGTGACATGATGCCAGATGACCATTCAGAGATCCCCTCAGCAGAAATAGCACATCATTATTCCCACCTCAAGCCAGTGGCGGAAAAAATCCCAGCCATTGATCCAGATGCAGCCATTCTTCTTCTTCTACTCGGCAGAGACATACTGCGGGTACACAAAGTATGTAAACAGTATAATGGACCCAACAATGCTCCATATGCTCAACAACTTGACCTTGGCTGGGTCATTGTTGGAGAAGTATGTCTCAGAGGAGCCCACAAGCCTAGCAGCGTTAATGTTTACAGGACCGATGTCTTACCTACTGGGCGTACGTCTTTTCTTAGATCATGTTATAGTGTTATTTACATCCAAGAAAAGTTTGACAAGAGGAGATCAACCCACGGTATACAAACCTTGAAAGAGATGGATATACTGGCAGATGACACCGATGATCTTGGAAGCACAGTATTCAAAAGAACAAAAGAGGATGAGAAGATAGCTTTGTCTATTGAAGATCAAGCCTTCCTTGAGATCATGGACAAAAACGTCCACATGAATGATGCAAACAGTTGGGTAGCTCCCTTACCATTCCATTTCTCAAGGCACCGTCTCCCAAATAATAGGGAGCAAGCAGTCAAATGTCTCTCATCTCTGTGTCACACACTGGAAAGAAAGCCAGACATGAAAAAACAATATATGGATTTCATGCAGAAAATCTTCAAGTCAAACCAGGCAGAACTAGCTCCGCCATTGAAAGAGAATCAAGAGTGCTGGTATCTACCAACATTTGGTGTCTACCACCCTAAGAAACCAGACCAAATACAGGTGGTGTTTGACTCCAGTGCCAGGTACGAAGGTGTCTCCCTCAACGACATCCTCTTGAAGGGACCAGCCCTCAATAACACTCTTCTTGGCGTTCTTCTTCGTTTCCGCAGGGAGCCTTTTGCAGTCACAGCAGATGTGCAACAGATGTTTTACTGTTTCACAGTATGTGAGGAACACCATGATTTCCTAAGGTTCTTGTGGTTCGAAGATAACGACTTCACAAAACCAGTGACTGAATACCGAATGACAGTACATGTATTCGGTAACAGCCCTTCACCAGCTGTGGCCATTTATGGCCTGAGAAGTGCAGCGCAAGAAGGACAAAAGGAATATGGCCAAAATGCTAAGCAGTTCGTTATCGTGCCAAAGATCTTAAAGGATCTGGATCTGTCATCTGATCCTTTGCCTCTCCAACGCAGTCTAGGCCTCAGATGGGACCTGCAAACAGACAGCTTCTCCTTCTGCGTGTCTGATGAGGAAAAGCCATTCACTAGAAGGTGCATCCTTTCGACGGTCAATAGTGTCTACGATCCCTTGGGGTTTGTGGCACCAATCACGATTCAGGGAAAGGCTTTGGTGAGAGATATCTCCTTAGAAGAGTATGATTGGGACACTCAACTACCAGACGACAAAATAATCCAGTGGAAAGCCTGGAAAGATTCCCTGATGGAACTTAAGCTACTCCGGATCCAGAGGACCTACCTTTCTGTTTCTCTGCTTACCACTGTACACAGAGAAATTTGTGTCTTCGCGGATGCATCGACTCTAGCTATATCTGCTGTAGCATACCTTAAGGCAGTTGATACAGAAGGACACAGTCATGTCAGGTTCATCATGGGGAAGTCCAAGCTGGCTCCACGTCCTGCGCACACTGTCCCTCGTTTGGAGCTGTGTGCAGCTATCTTGGCAACAGAGCTTGCAGACCTGATAATGGATGAAATCGATGTGGATATTCACACAGTCAAGAACTTCTATGTCTATGTCGCAAACAGAGTGACAAGAATCAGGAAATCCTCGCACCCTAATCAGTGGCACTACATCAGCACCAGCCATAATCCTGCAGATCACGGATCCAGGTCTGTCCCAGCCACTCTCCTAAAGGACACCAACTGGTTTTCAGGTCCACCTTTTCTGACGAAACCTGAGTTGGATGAGTCTCCTCAGCCAGAGATATTTGATCTTCTACATCCAGAATCTGATGCAGAAATTCACCCTCAAGTTTCAACCTATGCTACAAAAGTTACAGGTGGAGGTATCGGCTCTTATCAGTTTAGTAGATTCTCCAGTTGGAAATCACTCACCCATGCAACAGTCAGGCTCATTCAAAGGGCTAGAGCCTACTCCAAAAATACAGACCACAAACAGAGAATGGGTGAGCTTCCTCAAGCAAAACTCATAATTTTGAGAAGCGTACAACAGGACTTCTTTAAACAAGAAATTAAAAGCCTCTCAAAGGGTGAAGAAATCTCAAGACACAGTTCAGTCAGAAGTTTGGATCCCATCATTGATGATAATGGTTTTCTGAGAGTTGGAGGCCGAATATCACACTTCCATGAACAGGTTGCTCACCAAGGAAGACACTTCACTGAAGGCGCAGTTCGAACAGCTGGACTGTGGATAACAGGAAGTAAGAGACTGGTGTCAAGTGTGATTCACAAATGTGTGACCTGCAAAAGATTAAGAGGAAAGTTGGAAGAACAAAAAATGGCTGACTTACCTCTGGACAGACTCACCATGAATCCTCCGTTCACGAATGTTGGATTTGACGTTTTCAGACCTTGGGCCATCTTGTCGCTCAGGACCAGAGGTGGTCATGTAGAAAACAAATGCTGGGCAGTTATGTTCACGTGTCTGAGTACACGAGCGGTGTATATTGAGGTCGTAGAGACCATGTCATCCTCCAGCTTCATCAATGCTTTGAGGAGATTTACCGCTATCAGAGGTCCAGTGAAACGGCTCCGTTCCGGTAGGGGCACAAACTTTGTTGGAGCTTGCAAAGAACTGCAAATAAACTCAGAAGATCCTGAGTTGAAAGCTTACCTGCAAGAAAAAAGTTGCACCTGGACATTCAATCCTCCACACTCCTCTCACATGGGTGGAGTGTTGGAGAGGATGATCGGTGTTGCACGCCGCATTTTGGATGCCATGTTGTTGAAAGAGAACTGTCGCCTCTCTCATGAAGTACTTGTGACTCTCATGGCTGAAGTCATGGCAATCATGAATGCAAGACCTCTAGTTCCAGTGTCCTCTGATCCAGGGATGCCAGCTGTTCTCACACCAGCAATACTGCTCACTCAGAAGATTGACCCAGTATCTGCTCCTCTGGGGAACATGGATCTCAAAGATCTCTATAGCAAGCAATGGAGGCAAGTCCAAAGCCTCGCAGAAACTTTCTGGAGACGCTGGAAGCAAGAGTACTTGGAGACGCTCCAGATTCGCAAGAAGTGGAAATCAGAAAGACCGAACCTGCAAGTTGGAGATGTGGTACTCCTTAAAGACACTCAAGTTAAAAGGAATGAGTGGCCCACAGGTGTTATTGTGGAAACCTTCCCCAGCCATGCTGGCAGGATTCGGAAAGTCAATGTGAAGATCATGAGACAGGGTACTCCCAAGGTGTATTCAAGACCTGTTTCGGAAGTTGTGCTGCTTCTTAGTAAAGGGACCTAGTGGTATTATTTAATACCAGGCGGGGAGTGTTCTGCCCCCACTTTGGGTTGCATTAGAGACATCTAGTGGTTTAAAATTGTATTTCATTTGAGTTCTCATATTTTAGTCCCTCCTCTCTTGCCGTAGTTTTTCTGATTGCTTCTGACTCTAATCTACGGAGAGGACATGCAGCAGCTACTCTTTTCTCTTTGCCTTTGGTAGTTTATGAAGGTCTAAGTCTTTTTACAAAAAGATTGGAAAGATCCTTACTAAAGGCCTCTCTCTACTCCAGTTTCCTGGGTCTTTATTTCATGGATCTTATGTTAGCTATCTGCTACGCTAACCTGTTAAAGCAAGAGCAGAATAACCAGACTTGTTATTGTCCAGGAGCTTGTTCTATGCAAGAAGGTTAGACACTTGGTTGAAAACTACTCGTTCAAGTGTTTTTGCAATGAATGGAAGAAGGGATACTGGTCTGTAATTTTCTATGTATGTGTGTTAGCTGTTAAGATGTGCATGTCAAATTGTGGTGTGGAAAACTGGCCACTGATGGTGGATGTTTTATTTATGAAGAATGTGGCAAAGTCGGTTGATGAAGGAGGAGGAGGAGAGTGAAGAAGAGAGGAGAAGGGGGTGGTATAGGCTGGCTTGGATGAAAGGGAGCAGAAGTTGTCTAAGCGCAGTGTTAGAGTGAAGAAAAGAGTATCAGTTGAACTTTTAGTATCTAGTGATGAGAGCTGATTAGAGGGAGGAAGTGTGAATGAGACCAAAGAGGATAGGCGGGAGGGTGAGAGTGAGTATAGGTTACGTCAAAAGGTGACCTGTGGAGGTCTCCTCCCTCTTCTTTTTAAGCATTTCATTGCTTTAAATGACTTTCAACATTTAAATAATTACTACTTAAAAGCTATCAAATGTTTTAGATTGTCATTTCAAACCATATGTTTTACTTTTTATTATTATTGTGATATTTATATGCAGAAGAAAACACCATAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_06228655_06235149.mRNA True 7212 mRNA 0.43 5 6227678 6236617

Neighbor

gene id symbol gene type direction distance location
CI01000009_06214501_06218695 TLR20.2, TLR20F coding downstream 8846 6214295 ~ 6218832 (-)
CI01000009_06124385_06127298 NA coding downstream 99100 6123786 ~ 6128578 (-)
CI01000009_06072320_06072613 NA coding downstream 153296 6072173 ~ 6074382 (-)
CI01000009_06046712_06060022 NA coding downstream 167236 6045874 ~ 6060442 (-)
CI01000009_05994558_06000514 NA coding downstream 227164 5994558 ~ 6000514 (-)
CI01000009_06237366_06242607 NA coding upstream 541 6237158 ~ 6242627 (-)
CI01000009_06246303_06248176 SLC10A2 coding upstream 8953 6245570 ~ 6248176 (-)
CI01000009_06250463_06251001 NA coding upstream 13669 6250286 ~ 6251001 (-)
CI01000009_06253421_06255264 NA coding upstream 16804 6253421 ~ 6255946 (-)
CI01000009_06891877_06908223 EFNB2A, EFNB2 coding upstream 654624 6891241 ~ 6908223 (-)
G54137 NA non-coding downstream 22879 6204411 ~ 6204799 (-)
G54077 NA non-coding downstream 186011 6041458 ~ 6041667 (-)
G54068 NA non-coding downstream 204851 6022613 ~ 6022827 (-)
G54065 NA non-coding downstream 208322 6019046 ~ 6019356 (-)
G54156 NA non-coding upstream 229357 6465974 ~ 6530279 (-)
G54387 NA non-coding upstream 298477 6535094 ~ 6535317 (-)
G54411 NA non-coding upstream 333008 6569625 ~ 6569834 (-)
G54417 NA non-coding upstream 337293 6573910 ~ 6574168 (-)
G54488 NA non-coding upstream 396184 6632801 ~ 6633000 (-)
G53515 NA other downstream 722430 5502395 ~ 5505248 (-)
G52828 NA other downstream 1996209 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 2965721 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 3328271 2883688 ~ 2893975 (-)
G52410 NA other downstream 3665145 2551724 ~ 2562533 (-)
G55814 NA other upstream 2189204 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 2621535 8856310 ~ 8860563 (-)
G59097 NA other upstream 6051600 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 7738771 13975099 ~ 13978614 (-)
G59490 NA other upstream 7796947 14033564 ~ 14037873 (-)

Expression


Co-expression Network