gjd3 (gjd3)


Basic Information

Item Value
gene id gjd3
gene name gjd3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15134302 ~ 15135903 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255166.2
ACCGGACTTGTACTAGAAAGCGGTTGGGCTCTGTGGATCCATGTCCATTCAGTTAGCCAGTCCTGGACTTAAAATTTGACTCTGAATGACTGAGAGGCCTATCATATCTGCTGTTGCCCTTGGACCAAAGCAATTATGAGGACCTAAAGTTCTGGTGCTTGGGAATCCACTTGGAATACATGCAAATGGACatggtcttttttttcccccaagatGGTAGGAGCTAACCATAAAATATTACCCCTGGTGGATATCATCATTTCAGTTTTTTGTCTAGTGGAATTAATTTGGGTTTGACTTGAGAATATTGGACAATGGATAAACTTCTAGTCTTGGCAAACGTCATCGTTTCCAGCCAGTAATCTCAAAATTCAAGGAAAAAGCTTATTTCTGGCTTGCTTGGACCAAAAGCTTTACATTTCCACCTTCCGCCATGACTGATTTTGGTTTCCTTAGTGGACTCTTCGAGTCACTCCAGGCGAACTCGCCCATGCTGGGCCGTTTTTGGCTGCTCCTCATGCTGGTCTTCAGGATGCTGATCCTGGGAACGGTGGCCAGTGATATGTTTGAAGACGAGCAAGAGGAGTTTTCGTGCAACACGTTGCAGCCCGGCTGTAAGCAGGTTTGTTATGACCAGGCTTTCCCTATCTCCCAGTATCGCTTTTGGGTCTTCCATATTGTGCTCATCTCTACACCTGCTCTGGTCTTTCTTATGTATGCCATGCACCACCACAAAAAACACCAGGACTTTCAACAAGGATCTGTATCCAGTTTGTTGGTGGCAAAGCAGCAGCGTCATCTTAAACTTCTTTACATGGTCAACGTCGGCTTCCGTCTTCTTTCTGAGATCGGCTTTTTAGTTGGCCAGTGGCTGCTGTACGGCTTTCGCGTGGAGGCGCAGTTTCCCTGCAGTCGCTTTCCTTGTCCATACACTGTAGACTGCTTCACCTCCAGACCTATGGAGAAGACAGTCTTCCTGGTCTTCTACTTCGCTGTGGGAGTTCTCTCAGCTGTTTCCAGCCTGGTCGAGATCATTCACGTCACCCGAAAGTGGTTAATGGAAAATGGGGATGAGTTGGTACCTTGGAAGGATGTGGAACAGAGGGCAGAGCCTGATGAAGGGAATCTGAAGCAAAATGTACAGAACCTTGCACTGGGAAGTGGTACAGGGTCAAACAAATCCAGGCGGCCACCGCTGTTCACAGGAAAGGGTGGTAGAAGCAGCTGGAGATCACAAGGAACAGTAGGAAATACAAGGTACTCCAGTATCAAGAGCCTCAAAAGCACCAACAGCCAGAAAAGTGCCTCACTGGTGGTTTAAGGACCAGACATTTTGAACAATATTGCACACTATTGGAGTAAAAAGGCTACAGATATgagtaaatttaaaatttatatgtgtgtattacATACACACGTTGTTCAGGTCATATTTTGAGCCATATAGAAGAttaaaaaggtgaaaaataaacagtttgttGCACaagtaaattgtattatttattttattgcacagCCGAAGACTGATACCTGCAGACTTATGATACAAAGTTCTTAAATCCAACGCACAAACCAAGCTAGAATTAGGTCTACTGGAACTCt

Function

symbol description
gjd3 Predicted to enable gap junction channel activity involved in AV node cell-bundle of His cell electrical coupling. Involved in gap junction assembly. Located in cell surface. Part of connexin complex.

NR:

description
gap junction delta-3 protein

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07627 GJD3, GJC1; gap junction delta-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255166.2 True 1602 mRNA 0.45 1 15134302 15135903

Neighbor

gene id symbol gene type direction distance location
top2a top2a coding upstream 1049 15116824 ~ 15133253 (+)
LOC103032173 NA coding upstream 98348 15032389 ~ 15035954 (+)
LOC103032486 lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 143003 14967880 ~ 14991299 (+)
get4 get4 coding upstream 299955 14823653 ~ 14834347 (+)
LOC103041718 LOC108435036 coding upstream 312139 14798910 ~ 14822163 (+)
LOC103030376 raraa,rara,LOC108410801,LOC107678286,LOC107745620,LOC107716487 coding downstream 88549 15224452 ~ 15383888 (+)
LOC103029630 NA coding downstream 257112 15393015 ~ 15406356 (+)
LOC103029312 NA coding downstream 271582 15407485 ~ 15423095 (+)
LOC103028270 mpp2,LOC108410806,LOC108273574 coding downstream 305664 15441567 ~ 15520594 (+)
LOC103033971 NA coding downstream 485408 15621311 ~ 15672444 (+)
G36512 NA non-coding upstream 43926 15086356 ~ 15090376 (+)
G36511 med24,LOC107598039,LOC107660474 non-coding upstream 50362 15081564 ~ 15083940 (+)
G36510 med24,LOC107716488,LOC107660474 non-coding upstream 52957 15077784 ~ 15081345 (+)
G36503 med24,LOC107716488,LOC107598039,LOC107706820,LOC107678252,LOC107560528 non-coding upstream 70189 15053042 ~ 15064113 (+)
G36499 NA non-coding upstream 96325 15037778 ~ 15037977 (+)
LOC111192405 NA non-coding downstream 14268 15150171 ~ 15152128 (+)
G36524 NA non-coding downstream 41203 15177106 ~ 15181078 (+)
G36532 NA non-coding downstream 63919 15199822 ~ 15200073 (+)
G36560 NA non-coding downstream 240379 15376282 ~ 15379928 (+)
G36582 psmc5,LOC102777430,LOC107684752 non-coding downstream 405211 15541114 ~ 15547526 (+)
G36439 LOC103041415 other upstream 343469 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 566390 14564925 ~ 14567912 (+)
G36371 NA other upstream 670663 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1613600 13502246 ~ 13520702 (+)
G35995 NA other upstream 2431246 12702305 ~ 12703056 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 296926 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 1077887 16213790 ~ 16233839 (+)
sun1 NA other downstream 1864479 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 2065594 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 2096917 17232820 ~ 17234559 (+)

Expression


Co-expression Network