G36512


Basic Information

Item Value
gene id G36512
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15086356 ~ 15090376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49132
aggagtttcagccagagtgtcaggcgcgaaGAACTGACCAATTCGAAAGAATGGCGGCAACTCAGTATGTTTTTCTGCCCGGCAGTATTGTGGCCTACTCTGTGATGGGAGCGCTCATGGCGAGTGGTAAAGAGGTGGTAGGCAGAATCCCATCTGAAAAGTTTGCCAAGCTGGTACCAGAACCTTCCATCTATAGCGGAGACATTCCAGTTTTCCAGAACCATGATTGAAGTCCTGAACACTGActcttccactcactgtaccaaaATATCCTAATGAAGGTTCTTCCGGTTCTGAAATGGGCAGCTTCCACTTCCTCCCACCAAACAAGCTGGATTTCTGCTTATCCTGTCTTCCAGTTTTAAAACGCAGATCTTTTTCCCTTAAGGTCTTaaactttcttttattttcagagGGTCTTTACTAACGTTTCTATTTGACTAATAGGCCTATGCATTCGCCCTTTCCCAGCTGATGTCCGGAGATTAGTTAGTTTATAAAAATGACACAAACAAAGCACACTTAAAacttattaaaatttaaatttctatttatttatttcatgttcATTAACATTTTGAGTGACAATCATACTTTAATTTGCAAGTATTAGGCAAAGATAGATAGAGCACAAGTCCCCCTCATGGTCTGCATATTGGTGTTTTTCCCAATTACACACTCCTTCAGGGGTTTGATAACTCTATAAGCTggaaaacttggaaaaatgtgaaaacttGATCCTGGATACCAGGAATTACTGATTGATTCCAAACTGTGTGAAAAGTTTCTAAAACTTTCTGCAAATGTTTATGTAAAGTACTAGGCAGTTTAGGGATATACAAAATGTTTTACGTAAATAATAGATCAGCTTGCAAAAATACAATCTTCATATGAAGTATGCCAAAGCTCTCCTGTAATAGTTATactatattttacataaaataatagctttaaaataatataataaagtcaTGTTGGTTCAACAAAATGCATttgtggtggatggagaagagctgacttcagaaacttccagtctggccagacaggggacatgagagcctgaggCAAAATACTTTGcagcaaagtgtaaataaggtattgctaaacaaacagctaactaggtagtatcttgtctataatcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49132 True 1143 lncRNA 0.38 3 15086356 15090376

Neighbor

gene id symbol gene type direction distance location
LOC103032173 NA coding upstream 50402 15032389 ~ 15035954 (+)
LOC103032486 lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 95057 14967880 ~ 14991299 (+)
get4 get4 coding upstream 252009 14823653 ~ 14834347 (+)
LOC103041718 LOC108435036 coding upstream 264193 14798910 ~ 14822163 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding upstream 311159 14720879 ~ 14775197 (+)
top2a top2a coding downstream 26448 15116824 ~ 15133253 (+)
gjd3 gjd3 coding downstream 43926 15134302 ~ 15135903 (+)
LOC103030376 raraa,rara,LOC108410801,LOC107678286,LOC107745620,LOC107716487 coding downstream 134076 15224452 ~ 15383888 (+)
LOC103029630 NA coding downstream 302639 15393015 ~ 15406356 (+)
LOC103029312 NA coding downstream 317109 15407485 ~ 15423095 (+)
G36511 med24,LOC107598039,LOC107660474 non-coding upstream 2416 15081564 ~ 15083940 (+)
G36510 med24,LOC107716488,LOC107660474 non-coding upstream 5011 15077784 ~ 15081345 (+)
G36503 med24,LOC107716488,LOC107598039,LOC107706820,LOC107678252,LOC107560528 non-coding upstream 22243 15053042 ~ 15064113 (+)
G36499 NA non-coding upstream 48379 15037778 ~ 15037977 (+)
G36442 LOC103041415 non-coding upstream 292020 14793471 ~ 14794336 (+)
LOC111192405 NA non-coding downstream 59795 15150171 ~ 15152128 (+)
G36524 NA non-coding downstream 86730 15177106 ~ 15181078 (+)
G36532 NA non-coding downstream 109446 15199822 ~ 15200073 (+)
G36560 NA non-coding downstream 285906 15376282 ~ 15379928 (+)
G36582 psmc5,LOC102777430,LOC107684752 non-coding downstream 450738 15541114 ~ 15547526 (+)
G36439 LOC103041415 other upstream 295523 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 518444 14564925 ~ 14567912 (+)
G36371 NA other upstream 622717 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1565654 13502246 ~ 13520702 (+)
G35995 NA other upstream 2383300 12702305 ~ 12703056 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 342453 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 1123414 16213790 ~ 16233839 (+)
sun1 NA other downstream 1910006 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 2111121 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 2142444 17232820 ~ 17234559 (+)

Expression


Co-expression Network