RNA id: TU49132


Basic Information

Item Value
RNA id TU49132
length 1143
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G36512
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15086356 ~ 15090376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggagtttcagccagagtgtcaggcgcgaaGAACTGACCAATTCGAAAGAATGGCGGCAACTCAGTATGTTTTTCTGCCCGGCAGTATTGTGGCCTACTCTGTGATGGGAGCGCTCATGGCGAGTGGTAAAGAGGTGGTAGGCAGAATCCCATCTGAAAAGTTTGCCAAGCTGGTACCAGAACCTTCCATCTATAGCGGAGACATTCCAGTTTTCCAGAACCATGATTGAAGTCCTGAACACTGActcttccactcactgtaccaaaATATCCTAATGAAGGTTCTTCCGGTTCTGAAATGGGCAGCTTCCACTTCCTCCCACCAAACAAGCTGGATTTCTGCTTATCCTGTCTTCCAGTTTTAAAACGCAGATCTTTTTCCCTTAAGGTCTTaaactttcttttattttcagagGGTCTTTACTAACGTTTCTATTTGACTAATAGGCCTATGCATTCGCCCTTTCCCAGCTGATGTCCGGAGATTAGTTAGTTTATAAAAATGACACAAACAAAGCACACTTAAAacttattaaaatttaaatttctatttatttatttcatgttcATTAACATTTTGAGTGACAATCATACTTTAATTTGCAAGTATTAGGCAAAGATAGATAGAGCACAAGTCCCCCTCATGGTCTGCATATTGGTGTTTTTCCCAATTACACACTCCTTCAGGGGTTTGATAACTCTATAAGCTggaaaacttggaaaaatgtgaaaacttGATCCTGGATACCAGGAATTACTGATTGATTCCAAACTGTGTGAAAAGTTTCTAAAACTTTCTGCAAATGTTTATGTAAAGTACTAGGCAGTTTAGGGATATACAAAATGTTTTACGTAAATAATAGATCAGCTTGCAAAAATACAATCTTCATATGAAGTATGCCAAAGCTCTCCTGTAATAGTTATactatattttacataaaataatagctttaaaataatataataaagtcaTGTTGGTTCAACAAAATGCATttgtggtggatggagaagagctgacttcagaaacttccagtctggccagacaggggacatgagagcctgaggCAAAATACTTTGcagcaaagtgtaaataaggtattgctaaacaaacagctaactaggtagtatcttgtctataatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49131 lncRNA upstream 2416 15081564 ~ 15083940 (+) True G36511
TU49130 lncRNA upstream 5011 15077784 ~ 15081345 (+) True G36510
TU49129 lncRNA upstream 5011 15079126 ~ 15081345 (+) False G36510
TU49121 lncRNA upstream 22243 15053042 ~ 15064113 (+) True G36503
TU49115 lncRNA upstream 48379 15037778 ~ 15037977 (+) True G36499
XR_002649903.1 lncRNA downstream 59795 15150171 ~ 15152128 (+) True LOC111192405
TU49145 lncRNA downstream 86730 15177106 ~ 15181078 (+) True G36524
TU49153 lncRNA downstream 109446 15199822 ~ 15200073 (+) True G36532
TU49220 lncRNA downstream 285906 15376282 ~ 15379928 (+) True G36560
TU49243 lncRNA downstream 450738 15541114 ~ 15546201 (+) True G36582
XM_007255159.3 mRNA upstream 50402 15032389 ~ 15035954 (+) True LOC103032173
XM_007255160.3 mRNA upstream 95057 14967880 ~ 14991299 (+) False LOC103032486
XM_007255161.3 mRNA upstream 95057 14968126 ~ 14991299 (+) True LOC103032486
XM_007260032.3 mRNA upstream 252009 14823653 ~ 14834347 (+) False get4
XM_007255156.3 mRNA downstream 26448 15116824 ~ 15133253 (+) True top2a
XM_007255166.2 mRNA downstream 43926 15134302 ~ 15135903 (+) True gjd3
XM_007255152.3 mRNA downstream 134076 15224452 ~ 15382711 (+) False LOC103030376
XM_015607336.2 mRNA downstream 229391 15319767 ~ 15383888 (+) True LOC103030376
XM_007255155.3 mRNA downstream 258256 15348632 ~ 15382711 (+) False LOC103030376
TU49039 other upstream 295523 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 622717 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2383300 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2520385 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2715394 12366540 ~ 12370962 (+) True G35967
TU49230 other downstream 342455 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 1910006 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1910006 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1912064 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 2111121 17201497 ~ 17205033 (+) True phf5a

Expression Profile