RNA id: TU49795


Basic Information

Item Value
RNA id TU49795
length 1285
RNA type TUCP
GC content 0.36
exon number 4
gene id phf5a
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17201497 ~ 17205033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGTGAGCAGAGCCGCGATGGTAAAAGTGAATGGGTTCCGCCGCtgtagtccacactgtgtgctAACCCGCGATGGCTAAACATCATCCAGATCTAATCTTCTGTAGGAAACAGGCCGGTGTCGCTATCGGGAGGCtgtgtgaaaaatGTGATGGGAAATGTGTTATCTGTGATTCCTATGTCAGACCTTGCACACTTGTGCGCATTTGTGATGAGTGTAATTACGGGTCCTACCAAGGGCGCTGTGTGATTTGCGGAGGCCCAGGGGTGTCAGACGCGTACTATTGCAAAGAATGCACCATTCAGGAGAAAGACAGAGACGGCTGCCCGAAGATTGTCAACCTGGGAAGCTCAAAGACTGACCTCTTTTACGAGAGAAAAAAGTATGGCTTCAAAAAGAGGTGAAGATTTCGAAGAAGGCCTTCCTGATGTAGTTTTCAAAACCCTTTCTTCTGTAaagaatcatttttttattgtgttttcagTGTATTAAAAAACTACTTGTCTTGCAATATGtcattgatgtttttttctgctaagGTGAACTAAGATCACACAGGGAGTCTGAATTATGACAGAGAATTTTTTTAATGTCgacatctttttctttattaatatgtACAACAGGGGGTTATCAGGACAGTTTAACAGATTTACATCAacagttttacattaaaacaaacctaTGTATAAAAGCATGAGGGGGATACTACAGGCAAACAGGCCAACCAACATATTCAGATAATACAAAAAGTAGAAAATTAAGTCTTaagttaataaatgtttcataaaTAGCTGAAACCAGatacattttttcttctttttgtaatTCTAATTTTGGTGATATGTAATGTtaaatttatttcaatattatattaaggtttgtttttatatatgaatCAGTACAGACCTCATGTTTAGGCTTAAGTTATCTGGTTAACAGAGAAATCCTGCTTTCTAAAATACCCAAAACCAAATACTTGTAGAACAGTCAAATATGTACATAAATGCTAACTGCTAGCTACTGAAAATATCAAACATGCTTTACAAATCATTTTCAACCAAACTctctcaaagaaaaaaaaggtaagCCACGCCTTATCTAAGACAATTTTCCAATTTTTTGGAAATTAATCTCCGACATCAAATAGGAGTGAAAGTTATTACTGTAGAACTGTAAAACATAACAGACATTGGTTAGAAATGTTTAATCCCTTTTAGCCTGTCACAGAAcagaaacaatatttaaaacatgaagAGATCATGAGATTATTGTTGATATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49840 lncRNA upstream 28872 17172425 ~ 17172625 (+) True G36983
TU49839 lncRNA upstream 31641 17169351 ~ 17169856 (+) True G36982
TU49838 lncRNA upstream 34347 17166909 ~ 17167150 (+) True G36981
TU49833 lncRNA upstream 36094 17155946 ~ 17165403 (+) True G36977
TU49823 lncRNA upstream 143495 17057504 ~ 17058002 (+) True G36969
TU49865 lncRNA downstream 17367 17222400 ~ 17222875 (+) True G36998
TU49867 lncRNA downstream 18302 17223335 ~ 17223700 (+) True G37000
TU49868 lncRNA downstream 19008 17224041 ~ 17224407 (+) True G37001
TU49887 lncRNA downstream 68328 17273361 ~ 17276021 (+) False LOC103027613
TU49896 lncRNA downstream 92446 17297479 ~ 17340881 (+) False tnrc6b
XM_007251278.3 mRNA upstream 52149 17132606 ~ 17149348 (+) False LOC103030465
XM_007251276.3 mRNA upstream 52149 17132607 ~ 17149348 (+) True LOC103030465
XM_007251277.3 mRNA upstream 52149 17132611 ~ 17149348 (+) False LOC103030465
XM_007251283.3 mRNA upstream 69784 17123605 ~ 17131713 (+) True LOC103032149
XM_015606307.2 mRNA upstream 69784 17125320 ~ 17131713 (+) False LOC103032149
XM_015606315.2 mRNA downstream 27787 17232820 ~ 17234559 (+) True cby1
XM_015606314.2 mRNA downstream 32391 17237424 ~ 17240632 (+) True slc16a8
XM_007251267.3 mRNA downstream 36661 17241694 ~ 17247513 (+) True LOC103027934
XM_007251266.3 mRNA downstream 45948 17250981 ~ 17273867 (+) True LOC103027613
XM_022669217.1 mRNA downstream 121543 17326576 ~ 17340892 (+) False tnrc6b
TU49796 other upstream 182613 17000382 ~ 17018884 (+) False sun1
TU49797 other upstream 182613 17000382 ~ 17018884 (+) False sun1
TU49799 other upstream 182613 17002440 ~ 17018884 (+) False sun1
TU49230 other upstream 1761344 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 2410664 14789380 ~ 14790833 (+) True G36439
TU49869 other downstream 27846 17232879 ~ 17234550 (+) False cby1
TU49885 other downstream 74628 17279661 ~ 17282231 (+) False LOC103027613
TU49999 other downstream 500673 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 510096 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 513198 17718231 ~ 17719376 (+) True G37099

Expression Profile