RNA id: TU49833


Basic Information

Item Value
RNA id TU49833
length 2073
lncRNA type inter_gene
GC content 0.45
exon number 17
gene id G36977
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17155946 ~ 17165403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTGCTCAAATTCAGTCAGACGCTACAAAAAACGACAGACAGAAAAGTTCACCTTGTAAACATCATGATGGTCAAGGATGCTGTCGAAGTGTTTGTAAATGTCGTTAAGCATGTCCACCACCTCCATAGGTGTGCTGTAGTGGCAAAGAGTGGTGAAGCCCACAATGTCACTGAAGTAGATCGTGACCTCTTCAAACAGCTCAGGCTGAACCCTGCCCGTCTCCCTGGAAGCAGCATGAAGTTAAGATTAtccgctctgtctctctctgccttgTAGAGGGCGGTGCGCTCTTCCACCAGGTGCTCCAGGTTACGGGAGTACATCTGCAGCCGCCGGATCAGATTACCCATGTAGCTCTCATTGGCCTGGTTATGCAGACTGACAATCTTTCCCAAAGTGCTTTCAATCTTTTTGAAATCTGGTCTTCTCTCAGGATCCTCATCCCAACAGTTTCTGATTAGCATGAAGACCTCCAATTCTTTCTCACTCGCAGTTTCAAAGTTCAGATCAGGTCTAAAATAAGACATCATTCTGGGATACTGAACATGACCCAGCTTTTCAGCTTGGTCTGAACAGTCTCTGGTGTAGAATGTGCACTGTCTCAGCATGATTTCCTGCGCAATTATGGCAAAACTATAGACATCCCCTTTCTGAGAGATCCCCTCTTTCCGTAGGTGTTCTGGGGCAGTCCAAAGCTCTGTCTGGGCTGAAAATGGTATTAAAGCCAAAACCAGTGATTTTCACCACCATACGATTGTCAATCACACAGTTGGTGGATTTCAGGTGACCATGGACTTCAATTTTGCTCGAGTGAAGGTAGGACATGCCCTTTGCAATGTCATACATGACAGAGATTTTGTACTCCCAGTCCATGAAGGTTTCCTCTGGGTATGAAATCCTGTCATCAAGTaggtaCCTCAGAGATCCTCGCTCACCATACTCAAACACTCCAAGAACTTCTTGCTCCAGCTTGATGGTGCCATAGAATTTTATCAGGTTGTAATAATCTATTTGCAACAGTGCATTAAGCTCTATTCTCTGACTTTCGCTGAAGGAGCCGTCCGAGTGCTTCACCTTCTTAAGGAACACAATCTTTTTATCGTATCGTGCACAGCGGATTTTGTAGCGTTTATCCTTCCGTGAATCTTCATCAATCTTTAAAGACACCATGCTCCTCTCACTAAACTCTATAGGTGTGATGAGCTCTGTAGGGATGTGGGACCATTGCCTCTGCTTTTGGCGGTATGACCTGTTCTGCCAGTAGAAGCCGAATGCAACTGAAGCTATTACTGCTACAATTATGGATCCCAGTACTATAACAATGATCTCCTGCATCCACAGACCTTTGCGATCACTATTGGGCCGATCGTCAGGAAGGAGCCCGGAGAGCCAGATAAAGGAGGGGTTGTTCTCGACCAGCTCTGTTTGATTAACCGTGGTGTTGAACTCATAAAGAACTTTGTACTCATTGTTGGCATTGGTGTAAATCAGTGAAAACACCACATCTCTATCACCATGCTCATCTAACTCATAAACTCCTGCCATCCCTTTAAACGACACGTTTCTAAAGTAGTTTATGTTGACGGATTCTACGTCTTGAAGTTCTAATGCGGGAATGCTCCAGATTGCCCTCATAATCTGACCAAACAGCAGCACCCCGTCATGATATGCTGCAATATAATCGTTCATCGTGTTGTTTGTGCTGACGGTGTAGTTCCTTGTATTGGGCATGGTCAACACCAGGACATTCCTCATAGCAGAATTGGACGCTTCAGTGTAGTATCTGTCACCTGAAAATCAGCCCCATTATTTCTCTTGTCCATCAAGCTGCCAAAGTGAACGGTAATTCAACACTCTAGATAACACAATTTGGTGTTATATATCTCAGATTTTGTGCCCAGATACTGCGCCGAGTGGCTAAGGCGCTGCCAATATGATCCAAATGAAtggtttgggtaattggctgtgcaaaattggggagaacatgggaaaaaatagaaataaaatgattttaaaaagccaCACACCAGGCCTGATTTAAGTCGGCTCCAGGTTGATTCTAGGCCCAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49823 lncRNA upstream 97944 17057504 ~ 17058002 (+) True G36969
TU49804 lncRNA upstream 129015 17026187 ~ 17026931 (+) True G36956
TU49818 lncRNA upstream 130822 17024831 ~ 17025124 (+) True G36964
TU49816 lncRNA upstream 132531 17022768 ~ 17023415 (+) True G36962
TU49805 lncRNA upstream 135379 17020266 ~ 17020567 (+) True G36957
TU49838 lncRNA downstream 1506 17166909 ~ 17167150 (+) True G36981
TU49839 lncRNA downstream 3948 17169351 ~ 17169856 (+) True G36982
TU49840 lncRNA downstream 7022 17172425 ~ 17172625 (+) True G36983
TU49865 lncRNA downstream 56997 17222400 ~ 17222875 (+) True G36998
TU49867 lncRNA downstream 57932 17223335 ~ 17223700 (+) True G37000
XM_007251278.3 mRNA upstream 6598 17132606 ~ 17149348 (+) False LOC103030465
XM_007251276.3 mRNA upstream 6598 17132607 ~ 17149348 (+) True LOC103030465
XM_007251277.3 mRNA upstream 6598 17132611 ~ 17149348 (+) False LOC103030465
XM_007251283.3 mRNA upstream 24233 17123605 ~ 17131713 (+) True LOC103032149
XM_015606307.2 mRNA upstream 24233 17125320 ~ 17131713 (+) False LOC103032149
XM_007251273.3 mRNA downstream 36095 17201498 ~ 17204263 (+) False phf5a
XM_015606315.2 mRNA downstream 67417 17232820 ~ 17234559 (+) True cby1
XM_015606314.2 mRNA downstream 72021 17237424 ~ 17240632 (+) True slc16a8
XM_007251267.3 mRNA downstream 76291 17241694 ~ 17247513 (+) True LOC103027934
XM_007251266.3 mRNA downstream 85578 17250981 ~ 17273867 (+) True LOC103027613
TU49796 other upstream 137062 17000382 ~ 17018884 (+) False sun1
TU49797 other upstream 137062 17000382 ~ 17018884 (+) False sun1
TU49799 other upstream 137062 17002440 ~ 17018884 (+) False sun1
TU49230 other upstream 1715793 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 2365113 14789380 ~ 14790833 (+) True G36439
TU49795 other downstream 36094 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 67476 17232879 ~ 17234550 (+) False cby1
TU49885 other downstream 114258 17279661 ~ 17282231 (+) False LOC103027613
TU49999 other downstream 540303 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 549726 17715129 ~ 17715992 (+) True G37098

Expression Profile