RNA id: TU49885


Basic Information

Item Value
RNA id TU49885
length 2532
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC103027613
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17250981 ~ 17282231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTAGAGTCTTCGGGTGATTTGGGCGTGCTGGGGAACAGCACTTTAACAGGGCAGCCGTTGGGCGTGTCCACATCCAGACGAGGGAGAGATATTGCGTTCTTTATGATGGGGGAAATGGGTGGAGGTGGGGGAGAAAGGTCTTTGGTGCTTCCCCGTGGCCTCTCTGGGGTTTTGCGGACATGGCGCAGGGTTCGAGAAAAGAAGCCTTCACTTTTCTCTGAGGCAGTGATGGAGTCTCCATCTCCAGCATTCCCTGCTCCTCCGTGGTTGCTAAGGAATGATGTGTCTCCGAAAACATCGCCCCCTCTGCCCACGTGCATGGTGTGGCGGAAGTCACCCAGCGGTGGGCTGATCATCTCCGGGGTCAAATCACCCTTAAAGCGGCGCTTGCCTGATGAGTGGGACACCAGGCCCTTTAGTCCTGACAGCTTACCCAAGTTCATGACTGCAGCGTTTTCCTGGGCTGACAATGAGAATTACCCACacgaaacaaacaaacaaacaaaaacactcaaaatacTTTGAGCTGGACGTTCTGCTATTCCAGTAAAAATCCAGCAGTTCAGGATTTCTCCTATGCAGTGAAAAGAATCTGGCCTAATGTAGACAGGAAATGATCCACACATTACCATTCATGCAAAACTATGCCTGGCTCAGGGCTCCTCAGagcaaaactgaaaaaactgCAGCTGAGAGAGATGTTTCTCAGAAAGGCTTTTTCCATGAGAAAAACGCATAGCTCTTTTGTTGCCGGTTCTTGTCCATGTCCAAAATGCTCCAGTTGAGATGGATGCGAGTTGAAAATATGCATGTCCCCAATCCTGGAAACCTTGGTCGAGTATACGGTCAGAGATGCTGGGACGCGCAGTTGTTTTGGGGTTTCTGGCTCAGAAAACACAAGCTCAGAAATAAATCCAGCTCCAGCTGCAGATATCTTTTGTGGTTCAGAACTGGAACCATGGAACTCCTTCTATTTGAATCTGAGAGCGTCCACCGCTGCGTGTTGAGGAAGATCAAATGTTAAGAAAATATATGCAAGCTtctttttgtgcaaaaaaagaaagtgacGTGGTGCATGCGGTATGAGTGGGTAGTGCTGAGATACAAAAATAATGGGGACGTTTCTGCTGCACAGTTAGTTATCCTGCTGATTCTAGGCTTTGGAAAACTAGGTTATGTTCTATGCCAAATTCCCCAGGCTAAAGTCCATTGCTCTTCGAGTGTCCAAATTCCAAATGGCTTCGTGGTCATGGACCCTAAATCAAAAAGGGGggggagtatttttttttggcaagtAACAAATAGTATCTTGGTCATTTATTAGCAATATATCTTGCTGCAAATAAGCCTCCTACCCCTTAAGTGGAGTTTCTCAATCTGTGAGTGAGCCTGAGAAACTGGAAAAGGCCAAGCTCTTTACAAAGAGCAGCCTAAAGCTTATTCAAAATATGGGCTTATATACAGCCAAAAGCACCCAAGATACTGAGTGGTATCAGATAAAGACTCGCTTCACCAActtcttttaaagaaaaaaaaaagtcttcgaCAATGCCctgctgctgttttcttttGCTGTTATTTCAAGCTGGAATGTATAATGGCCATTGCTCCTTAAACATTTTGACAAAGTAGCCCACATTTACAGGCCTGCGTGTTTTACGAGCTTTCTGCCAAGACTGGCCTCCCACACATGTTAGTTCGACTTCATTAATGAGTTATTACGCCGCTCCAACAGGACTACGTCAGCTTTTAAATGGCCTATTAATTTGGCCTTGCCCGCATTCCAGATCCTGGCCCTTTTATTTTATCCGTCTCTTCTTTTAAAGAGGAGCTTTAAAGTTGTGCTATTGGCACATGGCAGTAGGTCTCATGCCCTCATATGGTGAAGAGCTCAGCTATGATGTTCTATTTAGCCCACAGCACTTCAACAAGTCCTCTGTTTGCAGAACACTAACTGTGCAATTCTAGACTGTGTTGATAAAGAGTCTTGTGCTGGCGTCTCCCTACAAAACCTCTTGTGACATCCACCCACAAGCCCGCTTTCTGACCAAGCAGCGAAGCGTGGAAACCCAAAGCCCTCTGAATCATGAGCATAACATCATTTGAAGTACTTTAATTAGCCGGACTGTGCACTGCTTTAATCCCAGTTTACTCAGTGTCCCGCTGTGGTGTGCTCTTTTAGTGGGGGAGTCCAGGGCACCCCACAAAGGCTCACTAATTTATCCCTGCATTTACACACTGTGTCCTGGCCGTGGGCTCCCCTTCTCCATGCTTAAAGTCCCACAAATCCAGGCGACtccggccaaaaaaaaaaaagaagaacgaAGGATTTTAAAGGCAATAATAAGTAAATGCGGTAATCTTCACGACAGTCTGTCTCAAGGGCCAAAAAGATCGACTCCTTAAGGATTGGTCTTGTCTTGGATTAGTGGCTAATCGCCCATCTCCTCTCGTCCCTCTTTTCAATCCCCTCGGCCTCCCTCAGTCTGTTTGGCTTTTGGCTGCGTGGGTGGCTGGTGTGGCTGGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49887 lncRNA upstream 3640 17273361 ~ 17276021 (+) False LOC103027613
TU49868 lncRNA upstream 55254 17224041 ~ 17224407 (+) True G37001
TU49867 lncRNA upstream 55961 17223335 ~ 17223700 (+) True G37000
TU49865 lncRNA upstream 56786 17222400 ~ 17222875 (+) True G36998
TU49840 lncRNA upstream 107036 17172425 ~ 17172625 (+) True G36983
TU49896 lncRNA downstream 15248 17297479 ~ 17340881 (+) False tnrc6b
TU49957 lncRNA downstream 185726 17467957 ~ 17468321 (+) True G37055
TU49958 lncRNA downstream 186249 17468480 ~ 17468772 (+) True G37056
TU49960 lncRNA downstream 188093 17470324 ~ 17470774 (+) True G37058
TU49962 lncRNA downstream 193187 17475418 ~ 17475771 (+) True G37060
XM_007251266.3 mRNA upstream 5794 17250981 ~ 17273867 (+) True LOC103027613
XM_007251267.3 mRNA upstream 32148 17241694 ~ 17247513 (+) True LOC103027934
XM_015606314.2 mRNA upstream 39029 17237424 ~ 17240632 (+) True slc16a8
XM_015606315.2 mRNA upstream 45102 17232820 ~ 17234559 (+) True cby1
XM_007251273.3 mRNA upstream 75398 17201498 ~ 17204263 (+) False phf5a
XM_022669217.1 mRNA downstream 44345 17326576 ~ 17340892 (+) False tnrc6b
XM_022669219.1 mRNA downstream 44345 17326576 ~ 17340892 (+) False tnrc6b
XM_022669215.1 mRNA downstream 44346 17326577 ~ 17340892 (+) True tnrc6b
XM_022669216.1 mRNA downstream 44346 17326577 ~ 17340892 (+) False tnrc6b
XM_022669220.1 mRNA downstream 44347 17326578 ~ 17340892 (+) False tnrc6b
TU49869 other upstream 45111 17232879 ~ 17234550 (+) False cby1
TU49795 other upstream 74628 17201497 ~ 17205033 (+) True phf5a
TU49796 other upstream 260777 17000382 ~ 17018884 (+) False sun1
TU49797 other upstream 260777 17000382 ~ 17018884 (+) False sun1
TU49799 other upstream 260777 17002440 ~ 17018884 (+) False sun1
TU49999 other downstream 423475 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 432898 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 436000 17718231 ~ 17719376 (+) True G37099
TU50046 other downstream 575686 17857917 ~ 17863066 (+) True G37131
TU50069 other downstream 670349 17952580 ~ 17960304 (+) True G37152

Expression Profile