RNA id: XM_022669215.1


Basic Information

Item Value
RNA id XM_022669215.1
length 7950
RNA type mRNA
GC content 0.51
exon number 22
gene id tnrc6b
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17297479 ~ 17340892 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtagaattaaagtaaaaagtcaGGGGGAAAATGCACAGTAaggaattacatttactttgttactGTCCACCACTGCAGCTGGCATCACTTCTCACGCtgattgcttttggataaatggtGTAGCTGAGAGGCAGGGAGATCACAGTCAGAAAAGGACAACTCACTCTTGTGATTCCATATATCAaagGAGCACCGGGAAAGGGAACAGCAGTTCATGGAAGACAAGAAAAGgaagaaggaagataaaagaaAAAGGGAAACCTCACAGAAGGTGGTCgagcaaaaaaacaaagTGCCAGAACTGACCAAGCCCCCATCTGCCCAGTCTCTTGCCACACCTAACTCGGTCTCCCCTAGCCCTGGCCCTGTTCCTTCTACAACCTCCTCCATTGCCACCCCGGCTGCTGGCACCCCCCCTCAGGGTGGGAACAATGCTAAGCGGCCGGCGGTGGCCAACGGACAGCCCTCCCCCAGCACCCAGGCCCCCCAGCGCTACATGCCCCGAGAAGTGCCCCCTCGATTCCGTTGCCAGCAGGACCACAAAGTGCTACTGAAAAGGGGCCAGCCTCCACTGTCCTCCATGCTGCTGGGGGGAAGCAACAATGGGGGAGACAGCCCCAGTGCAGCAGTGACTGCTGCTTCAGATTCCAGCCTGGGTTCTGCAGGTCCAGCTGCTCCCTCTCTGTCCCACACGTCATCCTCCTCATCAATCGCTGcttcttctactactacttcttCAAATTATGCAAATTCCATGTGGGGGGCAAGCTCTGGCAGCCAGCCCCTCTCTCAGGGCAGGGAGAAAGTGATAGTGGATGGGTCGGACCTGGAGGAATGGCCCAGCATTGCTGCTGGAGACGGGGCCAGAACAGGAGATGCGACAGTTACTGGAGGAGCAGATGGCAGCGTAGTACCGAACTGCAGTGCCTCATGGGGTGAACGGCACCTCCAGCAGCAGCCAAAGGCTGTGGGAGGAGGGAATGACGGAGGGAAAAGTGTCAGTTCTGGTAGCCCCTCCCCACCTTCATCCTCCTGTTCAACCAATGAATGTATGCAGCCTAGTAGTGTTGTTTGGGGGTCCCAGGGAGTCATAGGAGGAAATGCAGTAGCAGCAGGGTCATTACCCCCCATATCCAAAGCCTCCCCTCTCCCAGGGACTGATTGCTCTGTTGGCGTCAGCTGCGGAATTCCAGGTGCCAACTTTAACCCTAATGCCAACCCCTCTGCCTGGCCAGCTCTGGTACAGGATGGGGCTGGGGCAGCTGCAACAGAGGGTGGCCCCACTCCTCTCCAAAGCTCAAAGTCATTGTCTGCCAACAACTCCATTTCTGTGAATCAAGCCTCTCATCAGCACCAACTTCACCAAATGCAATACAGAGACGTAGAGCCATCCTGTAGAGACTGGGGTGGTGCGGCACTGGAGCCAGGAGCTGGACCAAAAAACACAGGCATGAAGGAAGGAGGTGATCTGGACTGTGGAAGTTCAGGTGGTGGGGATCTCTCTGCCTCGTCTTCCTCCTCCGCCTCTTCATGTGCTTGGAGAGCTCAGCCTTTTCCTGCAAATTCCAAAACGGGTGCCTCTAGGACTGATGCTTGGGAGAGTGGAGCAACAGgaagctctgtctctgctgaagGGGGAAACTCATGGGGGTTCAGAGGACAAGATGATAGACAGGGTGGAAGTACATGGGGCACCGGAAATGGTGGTCAGATATCTGGGGTATCTCAGGGAGAATGGGGTGGGGGAGTTGGGGATTGGGGTAATTCAAGCGGTGTTGGCAATCCAAGTGGTGGAAATGGAGGTGGCTCAAgtagtaacagcagcagcagtggtggCAGCGTAAGCAACCCTTCAGTTTCTTCCTCTACACCTTCGACTATGATAAGAGCTTGGGACAATCAGAAAGGAACTGGAGGAGATGGAGGGACAGGAGACACCAGTGAATGGGGAGGTCAAGGCAGCAGAGGCGGAGGAGGTACCTCATCCTCAAGTGGTGCAGAAAACTCGAGAAGTGGCAATCAGCACCATGGCCACCACCGCTCTCAACAGCCTTGCAACGCTGAAGTGGCCTTACAGAGTCTGCTTAGTCGGACGGACCTAGACCCTAGAGTGCTGTCAAACACGGGATGGGGACAGACACAGATTCGACAGAATGTGGCATGGGACTTGGAGGCAGATAGAGGAGCAGCAAGTGGAGCCAAATCTTCTGCACCAAGCCATCCACTGTATTCTGGCTCTACTGGAACATCAACCACTGCcccatcatcttcatcactgaTTCCTGGTGCACCCCAGAACTCAAATTCCAATTCCATCGTCGGACCCCCATCGGTCTCACCTCGTGAAGGCTGGgatagcagcagtagcagcagtggTTCCTCTTTGCCCAGTCGAGGTCCACAACCCTCTGGCAACAGTATTCAAAACCCTGGTGTTTCACAGGTTGGAAGTGGAGTGGGTAATTCATCAGGGGGGCAGAGCAAGCATTTTGGGGGCTGGGGAGAGCCAAATCCATCTGAGAGCCAAGGAAAATGTTGGGGCAGTGAGGGACAGGAGTGGAGAGAAAACACAGCAGGGAGCGGGTCAAGTGGATGGGGTGATTTTCGACAACAGGGTACTCCAGCAGGTGGAGACTGGGGAAACAGTCAGGAGGAGAAAGGGACCGGAGGTTGGAAAGAGATGCGAAGAGGAGATGGGGGAAATTGGGGACAGAGAAGCGGTAATGAATGGGGAGAACGTGAGTCAAAGACAAGCAGTGGGGGTTGGGGTGGTGGGAAGGATGGTGGAGGTACAGGTGGAGATTCAGAAGTAGGTACATGGGGCAGCTGGGATGAAGGAGCTCCAAGAAAAGCTTGGGGAGCAGGAGGTACCGAGACAGGAGGTGTTGGGACAGGAGGGGGGAACATGGGAAACAAATCTCACTCAAGCTGGGGTGGCAGCGTACACCCTTCACAGATGCCAAACAGCCAGACGGCCTCTCTGAAAGGTCAGgcacaacagcagcaacaaTCACAGCCCCAGCAGTCGCAGTCGCTGGATACAGGGGCCATGCAAGGGGGCTGGGGAAGACAAGGTGGTTCTTCAGCCCAGAGCCAAAGTTCAGGATGGACCTCAGGGCCCATACCTCAAATATCCAGTGGAACTGGAAGCAGTTCAGACCCTAGTGGTTGGGAGGAGCCTTCGCCACAGTCTATAAGCAGGAAAAAGGAAATAGATGATGGAACATCTGCCTGGGGTGATCCCAATAAGTATGCCTATGTCAATTATTGGGACAAAAACAATGACCCATCTGACCAACCGTTGCAGGCTCAGCCCCAGGGGCCTCCTCCACCTCAATCAGTAAGGAAGCCTGCAGCTCCTGCAAGCAGAGATGTGAACCTCACGCACTCCTCCAACAAGGGCCCTGCAATGGTAGCTCCGTCTGGATGGGGAGGGAATGGCTCTCCCTCCAGTCCGTGTGTGGACAACGGCACTGCAGCTTGGGGCAAGCCCACAGAAATACCTAGTGGTTGGGGTGACCCAGAAGACACTGGGAATGCCTCGGGCTGGGGTAACCCATCTCCCAACCCAGTAAAATCTGTTTCAAAGTCTATGCAAGAAGGTTGGGGTGAGCGAGAGGGATCTGTTAGTGCTTCACGCCACTCCAGCtgggaagaggaggaagaagggGGCGTAATGTGGAACAGTGCTGGATCTCAAGGCAGCAGCTCTTCCTATAACTCTGGGGGCTGGGGAAACAAGAAGGGAAACAAGGGTCCAATAAAAAGTGGAGACTCTTGGATAAACCCTATTAATAGACAGTTCTCTAACATGGGGATTCTGGGAGAGGATCCCAGTGGCCGTCCACTGGATCTGGCCCCTGGCCCTCCTCAAGAtaaaaagatggatggagacaAACGAGGAGTGGGTTTGAGTGACTACAATGGAGATATGCGCAAAGGAGGTCGTGGAGGGCCAGGAGGCGTAGTCTTCCGTTCGTCTAGTTCCAAAGAGGTGGGGCCTGGTGAGCCTGGGCCTTACTATGACAAGCAGACCTTGCCTTTCACCAATCAGGATGGGTGCCTTGGGGAGGAGGGGCCTTGTTCTCCATATTCTCCACCCACAGTCTTCAAGCCCTCTCCCCTCTACAACCACCCCAATCCCCCTAGACAAATGGGTAGTCATATGTTTGGAAGTAGTGGTGGGATGGCGCAACCCAGGCACCAGCAAGGAGTGCCACCCATTAACCCGACTGTACGAGCGCAAGTGCCTCATCAGTTCCTGTCACCTCAGGTGCCAGGCTCTGTTCTGAAGCAAATGCCTCCTCCAAGCTGTGGCGTTGGAGGAGTCAGTGGAGGGGTTTTTCCACCTCAGCTTTCCCCACAGAACATCGCCATGCTCAGCAGCATTTATTCCCCTCAAATTCAGTTCCAGCTGGCCTGTCAgctgctcctccagcagcagcctCAACAGCAGCAGCCTCAACAGCCGCAGCTTTTGCAGAACCAGCGCAAGTTCCCTCCAAATGTGCGTCAGCAAGCAGACCCACAACAGCTTGCCAGAATCATGGCTGTTctccagcagcagagacagcaacagcagcaggtgGGTAGTACAGGTGGGAGCTCTAAGCTGTCCCCCTCTCACCTTGGCAGTGGTGGTCCAAAAATGCCCATGCCTGACTCCTTTACTCACCCTGCCATGGGAGGCTCAGTAGCTGACCTGCATCAGAAATCATCAGCTGCATATTCAGGGTTTGGTTCTGGCCTTGAGTTGGGTTCAATGGTTGGTGCTTCTTCTGGTTTAAAAGAAGGAGGGGGACAGCAATCCCGGTTTAAATGGATGATGGAAGGTCACTCACCAGCTCCCTCCTCTCCAGACAGCGCAATTCACAAAAATGgCCCCATTGCTGCTCCTGTGAAGAGAGGTAGCTCGCCATACTCCCAGTATGAGATGCTGGGGGTGGATAGTTTGGGTGTGCCTTCGGACAGCTGGCAGAGAACCCCTGGGAACAAAATGGGAAACAAAACGGGCACATCCACATGGCCTCCAGAATTCCAGCCAGGGGTGCCTTGGAAAGGAATTCCGAGTGTTGATCCAGAATCAGACCCCTACATGACCCCTGGAGGTATACTGAGCTCATCGACCGTGTCGAGCATCAATGATACTGAGCACCCGTTGCTTCGAGATAACACAGAATCAACCCCCTCCCTAAACACCTTGCTGCCTTCACCTGGTGCCTGGCCCTACAGTGCCTCAGACAGCCCCCTCAACAATGCACACAATCCAGCTAAGTACACAGAGTACAAGCCAAGCTGGCCCCCTGAGCCTATTGGACACAACAAGCCTTGGAAGACCAATCGCAGCACTTCCCAGCTGCCACGCCCACCTCCTGGACTAACCCATCAGAAGCAGCCCTCTGTGTCCCCGTGGGCGGGAGGAGCACCACGCTTGGGCAGGGGCTGGGGTGGCTCTGGAGGCAGCCAAGAAAGCAGATACGGGCCTGGTAATGTCATGACCTCAGGCTCAACATGGAGTGATGGTGGAGCTTCAAGGGGAAGCTGTTGGCTGGTGCTAAGTAATCTTACTCCCCAGATTGATGGTTCCACACTGCGCACTATCTGTATGCAGCATGGTCCACTGTTGACCTTTCACCTTGGTTTAACCCAGGGCAGTGCTCTGATTCGCTACAGTACTCGCCAAGAAGCAGCCAAAGCTCAGAGTGCCCTGCACATGTGCGTTCTGGGCAACACCACAATCCTGGCTGAGTTTGTGAGCGAGGAGGAGGTCGCTCGCTATTTTGCACATTCCCAGGCAGGTGGAGCTGGGAGCACAACTGGAGCCAGTGCGGGCGGCGCCGTTACCGGGCCAACAGGAGCGGCGGTGTCGTCTGGCCCCGGAGCAGTGGGTGCTGGAAGTGCCGGGAGTATACCTGGTGGAGAGAGGGAGCGGCCTGGTGGAGGAAGCACTATTGCAGGAGGTAGCAACAACGGGGCCGTTGGTGGACCTGCAGGGTCTGGCTGGCAGAGTTTGGACGGTACGGGCAACTCCCCTGATCCAGTCTCAGCCCAAGGCTCCGGTCTGGGCATCTTCGCCCAGTGGAGCAACGGTGCAGGCGGAGGTGTAATGGGCAGCGGCACGGCAGGCGTGGAGCCGTCCAGGCAGGGGCTTTGGGGGGGCATGGCAGCAGGGTACCCcagcagcagcctgtggggGTCTCCTGCTTTGGAAGACCGGCACCAAATGAGCAGCCCTGCAGCACTGTTGCCTGGAGACCTGCTGGGTGGCGGGTCCGACTCTATCTGactgacacaaacacacatacacacacacacagcacagcacacacaggACAAAAACATGAGTATATTGAAAAAGCACCCACTTATATATCTACAGTTAATTAAATACAAGCATATAGTCACTGTCAAATGAACAATTTGCATACGTAACCTCAGTGGATAGTCCCAGAGTACATTTGATATACAGTAATTAGTAAACACATTTGCCAAAAGAATTATATTAGATGCACTCAGATACATGGTACAGATCCATACATACACTCAAATATATTCAAATGCTGACTTACACAAATGTCATTATTACAAATACCAAAATGCATTATGACATTATGAGTTTCAGACAACACTGGTTGCAGAtgtacacacactgttaaacaCATCAGTTTCACACAGGAGCCGTGCTCCAGACCCTGCTCTCCATAATCCGATATCCATTATAAAGTCCATACTCAGGAGCATGGAGATTCAGAGTATGAAGCTCGgccattgttttttgtttgtttgtttggtttttgtttttgtttttgtttgtttttcataagTATTTGCAGTGCAAAACTGCTGACTGATATACAGACGCACATGCCTACACATCCCTCGTACACCTTTTATCCTTAAATGAAGACTTTTACAGCAAGacttgaacaaaaaaataaaaaataaacagttggaCCTTAAAcacatggaaaaataaaaactggatGAAAATGACAAATATGTATGCATCATTACAATGTTCTATGTGATGTTGAACACTCGGCATAGAGGATTCTTCATATTGTTACAGCTCCCATTTACTGGCAAAGTCAAACACACTTCACTTGGCCTCGCTGTTCTGATGTCTGACtgtattttgtctttatttgttttaaatgtggaaCAGTGGAATCCAGAGATGTGTCTCTTCCTTAATATGCTGACCtcgttttttctcctttttttttcttttcatttcctcTTCAGTCAAGTTCGTCATGACTATGACTATGATCACTTGGATGTTAATTAGCTGTACAAGGCACCCTTTTGGCCTACGTGTGCATGAGAGAAGCCCTTAAATGGAGGAGGTGACACGAAGCATTAGTGTGGCATCAGTGAATGTGTGTCCTTGAGAGATTTACAAAGCGTGCTGTGCGTTTGCTAATATCTATGCTGGTTAGGGAGGCGAATAAATGTATGTGTGACAGCTTATTTCAGGTCTTTTGGCGTCTGTGTGCTGGATAAGTGTATGCAGAAACGTGTGAGTGTAGATGGAAAGTTCGAGAACATTGGCACTAATGAATATTTCTTAAGTTGTGGTTTTAGcagccttttttttgttttatatattgtctgaattgcaataatattaaagagaaaaaggtttttgttttgtcttgtcttttttttctttctttttttttttagaagaagaaaaagaagaaacaacCAACTGAAGGCATTCATACTGAGACATGCCAAACTTATTGTACCAAGCTGAGCTGGATGGATGTTTTAGGAACACTTAAAAGTTAccaattgtttattttttgttgttgtgtacCATTTTAAATTAAGGCAGGCTTTATCACTCCTGTTCAGGTTGTTTGTTTTCTGATTTtacaaagaaaaaggaaaattaatttaacaaaagAACAAGACGATTAATAAAGGTTGAATTAAAGTTT

Function

GO: NA

KEGG:

id description
K18412 TNRC6, GW182; trinucleotide repeat-containing gene 6 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49887 lncRNA upstream 50556 17273361 ~ 17276021 (+) False LOC103027613
TU49868 lncRNA upstream 102170 17224041 ~ 17224407 (+) True G37001
TU49867 lncRNA upstream 102877 17223335 ~ 17223700 (+) True G37000
TU49865 lncRNA upstream 103702 17222400 ~ 17222875 (+) True G36998
TU49840 lncRNA upstream 153952 17172425 ~ 17172625 (+) True G36983
TU49957 lncRNA downstream 127065 17467957 ~ 17468321 (+) True G37055
TU49958 lncRNA downstream 127588 17468480 ~ 17468772 (+) True G37056
TU49960 lncRNA downstream 129432 17470324 ~ 17470774 (+) True G37058
TU49962 lncRNA downstream 134526 17475418 ~ 17475771 (+) True G37060
TU49968 lncRNA downstream 168525 17509417 ~ 17509619 (+) True G37066
XM_007251266.3 mRNA upstream 52710 17250981 ~ 17273867 (+) True LOC103027613
XM_007251267.3 mRNA upstream 79064 17241694 ~ 17247513 (+) True LOC103027934
XM_015606314.2 mRNA upstream 85945 17237424 ~ 17240632 (+) True slc16a8
XM_015606315.2 mRNA upstream 92018 17232820 ~ 17234559 (+) True cby1
XM_007251273.3 mRNA upstream 122314 17201498 ~ 17204263 (+) False phf5a
XM_007251255.3 mRNA downstream 3045 17343937 ~ 17358593 (+) True LOC103024972
XM_007251250.3 mRNA downstream 17831 17358723 ~ 17374122 (+) True tmem184b
XM_007251251.3 mRNA downstream 17831 17358723 ~ 17374122 (+) False tmem184b
XM_007251249.3 mRNA downstream 45002 17385894 ~ 17390425 (+) True tomm22
XM_007251248.3 mRNA downstream 50838 17391730 ~ 17396057 (+) True dmc1
TU49885 other upstream 44346 17279661 ~ 17282231 (+) False LOC103027613
TU49869 other upstream 92027 17232879 ~ 17234550 (+) False cby1
TU49795 other upstream 121544 17201497 ~ 17205033 (+) True phf5a
TU49797 other upstream 307693 17000382 ~ 17018884 (+) False sun1
TU49999 other downstream 364814 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 374237 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 377339 17718231 ~ 17719376 (+) True G37099
TU50046 other downstream 517025 17857917 ~ 17863066 (+) True G37131
TU50069 other downstream 611688 17952580 ~ 17960304 (+) True G37152

Expression Profile