RNA id: TU49129


Basic Information

Item Value
RNA id TU49129
length 491
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id G36510
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15077784 ~ 15081345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCTGCATCCTCTTTATCATCATTAGCTGTTCCACCAGTGGCTGGGTCTCTCCTGTCAGGTTCATGGTCCCCTCCAGCATGATGAATGCGTGAACTGAAGGGAAGGTAGTCTGCACTGGAGGGTCACACTGAATACACACCATCTGAGGAATACTCTTAACAAGAGAGATGCACTCCTCCAGCTTGTTGCTCAGCGTCTGATTGCTCAAACTGCTGAGATTCTCCACCAGTTTGATTAAAGCCTGCTCCACGTTGCTCCAGGAGGCCTGTTCCTCAAGGCGTGCAATGTGCACCAGGGCTCGATTCTTGGTCCGCTGCAGAAGGCTTTCCAGACGTTCCTGGCAGGCACTGAGGCTGGCCTCACCGGCGGGCAGCAATCCAGGTTCTCTCAGCTTCTCGCAGTACCAGGCACATCCCTGCAGGAGCCACACCACGATGCCCAGCAGAGCTCGGCACAGGCCGATGCACTCCTCTGCCTTACCCTGACAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49121 lncRNA upstream 15013 15053042 ~ 15064113 (+) True G36503
TU49115 lncRNA upstream 41149 15037778 ~ 15037977 (+) True G36499
TU49043 lncRNA upstream 284790 14793471 ~ 14794336 (+) True G36442
TU49037 lncRNA upstream 291825 14786050 ~ 14787301 (+) True G36437
XR_002649879.1 lncRNA upstream 460492 14617050 ~ 14618634 (+) False LOC111192375
TU49131 lncRNA downstream 219 15081564 ~ 15083940 (+) True G36511
TU49132 lncRNA downstream 5011 15086356 ~ 15090376 (+) True G36512
XR_002649903.1 lncRNA downstream 68826 15150171 ~ 15152128 (+) True LOC111192405
TU49145 lncRNA downstream 95761 15177106 ~ 15181078 (+) True G36524
TU49153 lncRNA downstream 118477 15199822 ~ 15200073 (+) True G36532
XM_007255159.3 mRNA upstream 43172 15032389 ~ 15035954 (+) True LOC103032173
XM_007255160.3 mRNA upstream 87827 14967880 ~ 14991299 (+) False LOC103032486
XM_007255161.3 mRNA upstream 87827 14968126 ~ 14991299 (+) True LOC103032486
XM_007260032.3 mRNA upstream 244779 14823653 ~ 14834347 (+) False get4
XM_007255156.3 mRNA downstream 35479 15116824 ~ 15133253 (+) True top2a
XM_007255166.2 mRNA downstream 52957 15134302 ~ 15135903 (+) True gjd3
XM_007255152.3 mRNA downstream 143107 15224452 ~ 15382711 (+) False LOC103030376
XM_015607336.2 mRNA downstream 238422 15319767 ~ 15383888 (+) True LOC103030376
XM_007255155.3 mRNA downstream 267287 15348632 ~ 15382711 (+) False LOC103030376
TU49039 other upstream 288293 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 615487 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2376070 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2513155 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2708164 12366540 ~ 12370962 (+) True G35967
TU49230 other downstream 351486 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 1919037 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1919037 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1921095 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 2120152 17201497 ~ 17205033 (+) True phf5a

Expression Profile