LOC103030008


Basic Information

Item Value
gene id LOC103030008
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17916864 ~ 17924970 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669243.1
CAGCCACCAGAGAACCACTGAGGACAGAAGACACAGAAGAAGAAACTGTAGTTTAGTGATGATAAAACAATGTTAGATCATAGAGAAAGTTGAGACACGGATAAAGaagatcagagtttaaacaCAGAAAGAAACTAAAGAAGCTCTAGAGGAACTATCTATCTCAGAAGAGGATGCTGGGAGTGGAGATGTACCCTAGCTTGGCCCTTGCGGCCCAAAGACTGGGAGACTGCTATTACCGAGAACAACAGCCCCCAGCCCATGTGCCCCTATACCCTGCATCATGTGACATGATGGCCCGAAGCCTGCCCACCCGCATGCTGGCCCCACCTCCCAACACCGAGCCCCCTGGGAAAGCCCTGGATACTGTAAAGATGGAGCTGGAGAACGCGTCGTTATGGAAGCAGTTCAGTACTGTTGGTACAGAAATGATCATCACCAAGAAGGGCAGgCGGATGTTTCCTCAGCTCAGGCTGAAGCTGTCAGGCTTGAACCCGTCTCTACGGTACATTCTCCTGTTAGACATCGTTCCTGTAGACTCCTCCCGATACCGGTTTCAGGACGACAGCTGGCAGGTGGTAGGTGGGGCTGAGGCTCGGCTCCCAGACCGAGTGTTCATCCACCCCGACTCCCCTGCGACTGGAGAACACTGGCAGAACCGCACCATATCCTTCCACCGAGCCAAACTCACCAACAACACACTGGACATGCAAGGACATATCATTCTTCACTCCTTGCACAAGTATCAGCCGCGAGTGCACGTGATTGAGGCCAGAGACGTGCTGATGTGGGGAGGAGCCCAGCACTCATTCACCTTCCCTGAGACCCAGTTCATCACCGTTACGGCCTACCAGAACAACAGGATAACAGAGCTGAAGATCAACTCAAATCCCTTCGCCAAAGGTTTCAGAGAAAATGGAATGAACTGTAAAAAACAGCGAGAGGCTAGACAGAAGAGGAAACTGCCCCACCCACACCAAGAGGAACCTTTAGACATAGAATCGTGTGACCCGTGTGATTCCACCGAGGTCCTACAGCAGCCCCTGGTCCTGCAGAGCACCACCATGCCACTACCTGATTCAGGCTTCTGCCCTGATGTGACGTCTTTCCAAGAGCAGACAGGTCAACAGCACATCTCTGGAGAAGCTTTTCTGGGTTCCCATATGACCCAGATACCTGAGATCTCAGAGATTCCTGATTCCAGAGAGAACCAACCGCAACCAAGCTCAGACAGCGACGTGAACGGTGGATTGCTTCATGGGTCTACCCAAATGATGGCACTTTCTTCATACAACACATTTACAGGCCCTCCTATTACATCATCATCTCACCCACCAGTGGCTCATCCTCAACCTTCATCACTCTATTCCTTAGTTTCTTCCACCCAGGCAACGGATCTGCCATCCTCTCATTCTAACCAATCCTCTTTACAAGATTACTCTTCCATGACGTCTTCCCACTACCCCCTATCCACCACCCTGGATTCTTCTTCTCCAGTCACAGCTTCCTCTACCTCTCCCCCAAGCTCTACttatccctccatctctcattcttcctctcctcctcagtTACCCCCTCTCTCTGCTTCCTACCACTCTGTCCATCAAACCCAAGACAACCTTAGTCCTCACACACCAACAAATTCACCCTTCCAGTCTCTTCCTCCACCATCCTGCCAGTCTATCAATGGTTGTGCTTCCAGTCTGTCTTTAGACCCAACACAGAACCAAGCTGTAGATGGAGGCTTGGTCAATACACCACCTTCTGTTCAGGATGGAACCCAGACTGCCTTTCCATTCCCTCCTGTGCAGTCATCCAACGGCACTGATCCCACCACACCCCCAAACCAAATTGTACCACAAACTGCTTTCCCCTTTCCTCCAATACCACAGACGCAAAATACGCAAAATCAAGACGCAAATCAAATTCCAACTGCGTTCCCTTTATTTGCGGTCTCAAACCCCGCCTCCAACCCTGTTTCAACTCCATCTGATCCCAACACCCAAAACTCCACAGCCTTTCCTTTCCCCACGATTTCCCAACAACCCAACAATCCAAATCCATCAAATTCCCCACCCATGCAAACCCCATCAGCTTGCTCTTTTACAACCACCCAACCACCATCCTCAACTTCTCACCTCAACCCTTCTCCGTCTTTCCAAAACCCTTCAACAACCACTCATTCAGTAACTCAATCCTTCCCtccacaaccatcaaaccaacaaATCAATATACAAATCCCTATAGTCAATCCTAATCCCAACCCTAATCCTTCTGTCTCTGCTTCTCTGCCTACCACATTTCAACCCCCTCAACCATCCTATGCCTTTCCCACCACCATCCCCTCAGGTCCCCATCTCTTCCAGAATCTAGCCATGCCTCCTACTGGCTCTTCTCATGCTGTTCCAGCCATTCCAAACATGGCCCATTTCCAGCCCACGATCCCCCAGTCACTATCAGCCTCCACCTTCAGCCATATCCCTCCACAGTGCAACTCAAACCCCACTCAAATCCCACCACAGACCTTCATGCCTGTACAGGCTTCCCATCCGACCCCCCACCTCCCACCACATTCAGCTCTACAGAACCACTCCCTCCCCCCGGCCCCCACCCACACTCAATACACTGCCAATCCCAACGCCTACCCAGCCGTGGCAGCATCTGAGGTGGGCTCATTTTCTCAGATGAACCCACCACCCGCCCCATACCTGCCCGACGTAGTACTCCacccctccctccttcctcctTTAGACCACCCACTTTCCTCTTCTGCTCCACCCGCCCGATACAACCCCTTCCCTTCCTACCCTCTCCGCCTGTGCCAGGACCCCCGCACCTCCTTCCACTTACCACTCAGGCACATCTACAGGCAGCCCCAGCACGTACACCCGCACAGCCAGGGGCCGTACCTGGACCTAGGAGGAAGGGCTGCGTACTGAGGAGGCACTCTTCAAAAGATTAAAGGATAATCAATGagatctttaatattaaaagtgGACTGAATTAAAATTGTTGAACGACagctttttaaagatattttgtaAAGCAGTTACGGCTTCAAATGatgaaatgtacatttatttaaagtccCACGGATGAGAATTTCTAGCCTTAAACTTTTGGGGACTCATTACTGATCTGTTTTAGCTTCAATTTTAGAGAATTTTACAATgcagtttatattttttcatgtatttgttATATCTGTATACTGGCATTAATTGTGGCATTAAAGTGTGCTTGTTTTATTTGTCAA

Function

GO: NA

KEGG:

id description
K10180 TBX6; T-box protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669243.1 True 3256 mRNA 0.50 9 17916864 17924970

Neighbor

gene id symbol gene type direction distance location
nif3l1 nif3l1 coding upstream 13155 17896790 ~ 17903709 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding upstream 28615 17878595 ~ 17888249 (+)
pagr1 pagr1,LOC107708911 coding upstream 114247 17796834 ~ 17802617 (+)
g6pc3 NA coding upstream 382587 17521497 ~ 17534277 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding upstream 425800 17483919 ~ 17491064 (+)
LOC103029386 NA coding downstream 104128 18029098 ~ 18039806 (+)
mapk7 NA coding downstream 203470 18128440 ~ 18138878 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding downstream 246384 18171354 ~ 18185983 (+)
LOC103030877 NA coding downstream 275381 18200351 ~ 18214204 (+)
LOC103032559 LOC108441169 coding downstream 407504 18332474 ~ 18343461 (+)
G37141 NA non-coding upstream 3779 17912822 ~ 17913085 (+)
G37137 NA non-coding upstream 23902 17892662 ~ 17892962 (+)
G37120 maz non-coding upstream 88196 17822411 ~ 17828668 (+)
G37108 vps25 non-coding upstream 123063 17792026 ~ 17793801 (+)
G37097 NA non-coding upstream 202773 17713885 ~ 17714091 (+)
G37151 eif3c non-coding downstream 16878 17941848 ~ 17949188 (+)
G37153 NA non-coding downstream 18688 17943658 ~ 17944500 (+)
G37391 aldoa,aldoab,LOC107720037,LOC107654538,LOC107581735,LOC107674678,LOC107660459 non-coding downstream 117998 18042968 ~ 18055855 (+)
G37394 NA non-coding downstream 126728 18051698 ~ 18053555 (+)
G37410 NA non-coding downstream 202130 18127100 ~ 18127560 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 53798 17857917 ~ 17863066 (+)
G37099 NA other upstream 197488 17718231 ~ 17719376 (+)
G37098 NA other upstream 200872 17715129 ~ 17715992 (+)
LOC103045739 LOC103045739 other upstream 208267 17705679 ~ 17708597 (+)
tnrc6b tnrc6b other upstream 575972 17297479 ~ 17340892 (+)
G37152 LOC108425993 other downstream 27610 17952580 ~ 17960304 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other downstream 36970 17961940 ~ 17970999 (+)
LOC103046566 NA other downstream 139013 18063983 ~ 18099979 (+)
G37404 NA other downstream 182594 18107564 ~ 18113926 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 446408 18371378 ~ 18376345 (+)

Expression


Co-expression Network