LOC103029386


Basic Information

Item Value
gene id LOC103029386
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18029098 ~ 18039806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605694.2
CAGACAGACATCGGCATAACGGCAGGCCAGACGACATCGTTCTCCTCTGCTCATCCTTCCAGACTGAGCCATGAATTTATCACTGATCTCACTATGTGTTACTCTAACACTGCTGTGTGCTGGAGGCTCAAAGGCACAGACTGAAAACAGCTGTGGGTTTGCTCCTCTGAACACCCGCATTGTGGGAGGTGCCAATGCCCAGGCGGGGAACTGGCCCTGGCAAGTTAGTATGCATCACCAAGATCAACACATATGTGGAGGAACACTCATCCACCAGGAGTGGGTTCTCACCGCCGCCCACTGTATCCTCTCCTTAGATACCAGCAACTGGATGCTGTACCTGGGAAGAGAGAATCAGAGCACAGCCAATCCCAATGAAGTGAGCCGGGGTGTCCAGGAAATTATCATGCACCCCTCCTACAACAACACTCTGTTCAACAACGACGTCACCCTGATGAGGCTGAGCTCACCGGTCAACTTCAGCGACTACATCCGGCCCATCTGCCTGGCATCCAATTCCAGCACTTTCTACAGCAACACCACCTGCTGGTCCACAGGCTGGGGACTCCTTAGGCATAATGAGTCTTTAGCCTCTGAAACCCTGCAGGAGGTAGAGGTCCCTGTCGTGGGCAACAGCCAGTGTGCATGCAACTATCAGGTAGCAAAGGATGCCAACATCACGGCTCAGATGATTTGTGCGGGCAGTGCGGGTAAAGGAACTTGTCAGGGTGACTCTGGAGGTCCGCTGCAGTGTAAGCAGGGTTCTGTTTGGGTCCAGGCGGGCGTGACCAGTTATGGAATCTCCTGTGCCGCTGGGATTCCCGAGGTTTATGCCCGTGTGTCAGAGTTCCAGTCCTGGATCACTGAGAACGTCGCTGGATCCAGCATTGGCTTTGTGACCTTCTCATCCACTGGGGAGGATTCAGACAGCAGCTTCACCTGTACCGAAGACAGCTCTAGCTCAGCTGCTGCCCAGCCAACCCTTTCCCTGTTCAGCGTTCTCCTCATCTTCCTCTCATTCCACCTGTGTTCCTCACTCTGATCTGCTCAGGAGTCCACCCACCCGCTATTCTTCTCCTCTTAGAGAAGATCTCCACATGCTCACCCTAAATacccttaaaataaaaaagtgattgaATACAAATACAAACCACCAAAGGCGTAGCAGCATGTTTGACACATTTGCTAAAACGAATCTAAGCCCACCCTACAGTGAATTAGAATTTGCTGAGTTacatttaatcacaaaaaaactaaatacatttttctctacttttgattattattagttaaatccaagCAAAGGTCACTTAACAACCTAAACAttttactccacattacatttactgttgttagaaaaaaaatgtgaaatgtctgcattatatacatatgacaaaaaact

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605694.2 True 1402 mRNA 0.49 6 18029098 18039806

Neighbor

gene id symbol gene type direction distance location
LOC103030008 NA coding upstream 104128 17916864 ~ 17924970 (+)
nif3l1 nif3l1 coding upstream 125389 17896790 ~ 17903709 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding upstream 140849 17878595 ~ 17888249 (+)
pagr1 pagr1,LOC107708911 coding upstream 226481 17796834 ~ 17802617 (+)
g6pc3 NA coding upstream 494821 17521497 ~ 17534277 (+)
mapk7 NA coding downstream 88634 18128440 ~ 18138878 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding downstream 131548 18171354 ~ 18185983 (+)
LOC103030877 NA coding downstream 160545 18200351 ~ 18214204 (+)
LOC103032559 LOC108441169 coding downstream 292668 18332474 ~ 18343461 (+)
LOC103034039 LOC108441161 coding downstream 380387 18420193 ~ 18449203 (+)
G37151 eif3c non-coding upstream 79910 17941848 ~ 17949188 (+)
G37153 NA non-coding upstream 84598 17943658 ~ 17944500 (+)
G37141 NA non-coding upstream 116013 17912822 ~ 17913085 (+)
G37137 NA non-coding upstream 136136 17892662 ~ 17892962 (+)
G37120 maz non-coding upstream 200430 17822411 ~ 17828668 (+)
G37391 aldoa,aldoab,LOC107720037,LOC107654538,LOC107581735,LOC107674678,LOC107660459 non-coding downstream 3162 18042968 ~ 18055855 (+)
G37394 NA non-coding downstream 11892 18051698 ~ 18053555 (+)
G37410 NA non-coding downstream 87294 18127100 ~ 18127560 (+)
G37411 NA non-coding downstream 102198 18142004 ~ 18142378 (+)
G37413 NA non-coding downstream 111562 18151368 ~ 18160034 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 58099 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 68794 17952580 ~ 17960304 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 166032 17857917 ~ 17863066 (+)
G37099 NA other upstream 309722 17718231 ~ 17719376 (+)
G37098 NA other upstream 313106 17715129 ~ 17715992 (+)
LOC103046566 NA other downstream 24177 18063983 ~ 18099979 (+)
G37404 NA other downstream 67758 18107564 ~ 18113926 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 331572 18371378 ~ 18376345 (+)
LOC103022762 NA other downstream 605829 18645635 ~ 18707728 (+)
G37749 NA other downstream 1289562 19329368 ~ 19331661 (+)

Expression


Co-expression Network