RNA id: XM_015605694.2


Basic Information

Item Value
RNA id XM_015605694.2
length 1402
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC103029386
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18029098 ~ 18039806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGACAGACATCGGCATAACGGCAGGCCAGACGACATCGTTCTCCTCTGCTCATCCTTCCAGACTGAGCCATGAATTTATCACTGATCTCACTATGTGTTACTCTAACACTGCTGTGTGCTGGAGGCTCAAAGGCACAGACTGAAAACAGCTGTGGGTTTGCTCCTCTGAACACCCGCATTGTGGGAGGTGCCAATGCCCAGGCGGGGAACTGGCCCTGGCAAGTTAGTATGCATCACCAAGATCAACACATATGTGGAGGAACACTCATCCACCAGGAGTGGGTTCTCACCGCCGCCCACTGTATCCTCTCCTTAGATACCAGCAACTGGATGCTGTACCTGGGAAGAGAGAATCAGAGCACAGCCAATCCCAATGAAGTGAGCCGGGGTGTCCAGGAAATTATCATGCACCCCTCCTACAACAACACTCTGTTCAACAACGACGTCACCCTGATGAGGCTGAGCTCACCGGTCAACTTCAGCGACTACATCCGGCCCATCTGCCTGGCATCCAATTCCAGCACTTTCTACAGCAACACCACCTGCTGGTCCACAGGCTGGGGACTCCTTAGGCATAATGAGTCTTTAGCCTCTGAAACCCTGCAGGAGGTAGAGGTCCCTGTCGTGGGCAACAGCCAGTGTGCATGCAACTATCAGGTAGCAAAGGATGCCAACATCACGGCTCAGATGATTTGTGCGGGCAGTGCGGGTAAAGGAACTTGTCAGGGTGACTCTGGAGGTCCGCTGCAGTGTAAGCAGGGTTCTGTTTGGGTCCAGGCGGGCGTGACCAGTTATGGAATCTCCTGTGCCGCTGGGATTCCCGAGGTTTATGCCCGTGTGTCAGAGTTCCAGTCCTGGATCACTGAGAACGTCGCTGGATCCAGCATTGGCTTTGTGACCTTCTCATCCACTGGGGAGGATTCAGACAGCAGCTTCACCTGTACCGAAGACAGCTCTAGCTCAGCTGCTGCCCAGCCAACCCTTTCCCTGTTCAGCGTTCTCCTCATCTTCCTCTCATTCCACCTGTGTTCCTCACTCTGATCTGCTCAGGAGTCCACCCACCCGCTATTCTTCTCCTCTTAGAGAAGATCTCCACATGCTCACCCTAAATacccttaaaataaaaaagtgattgaATACAAATACAAACCACCAAAGGCGTAGCAGCATGTTTGACACATTTGCTAAAACGAATCTAAGCCCACCCTACAGTGAATTAGAATTTGCTGAGTTacatttaatcacaaaaaaactaaatacatttttctctacttttgattattattagttaaatccaagCAAAGGTCACTTAACAACCTAAACAttttactccacattacatttactgttgttagaaaaaaaatgtgaaatgtctgcattatatacatatgacaaaaaact

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50075 lncRNA upstream 58099 17967916 ~ 17970999 (+) False G37155
TU50068 lncRNA upstream 79910 17941848 ~ 17949188 (+) True G37151
TU50072 lncRNA upstream 84598 17943658 ~ 17944500 (+) True G37153
TU50057 lncRNA upstream 116013 17912822 ~ 17913085 (+) True G37141
TU50053 lncRNA upstream 136136 17892662 ~ 17892962 (+) True G37137
TU50425 lncRNA downstream 3162 18042968 ~ 18055855 (+) True G37391
TU50423 lncRNA downstream 4819 18044625 ~ 18046413 (+) False G37391
TU50433 lncRNA downstream 11892 18051698 ~ 18052867 (+) True G37394
TU50434 lncRNA downstream 12730 18052536 ~ 18052867 (+) False G37394
TU50435 lncRNA downstream 12730 18052536 ~ 18053555 (+) False G37394
XM_022669243.1 mRNA upstream 104128 17916864 ~ 17924970 (+) True LOC103030008
XM_022669231.1 mRNA upstream 125389 17896790 ~ 17903709 (+) True nif3l1
XM_022669232.1 mRNA upstream 125389 17896892 ~ 17903709 (+) False nif3l1
XM_022669230.1 mRNA upstream 140849 17878595 ~ 17888249 (+) True cabp5
XM_007248683.3 mRNA upstream 226481 17796834 ~ 17802617 (+) True pagr1
XM_022669246.1 mRNA downstream 24177 18063983 ~ 18099979 (+) True LOC103046566
XM_007248723.3 mRNA downstream 88634 18128440 ~ 18138878 (+) True mapk7
XM_022669250.1 mRNA downstream 131548 18171354 ~ 18185983 (+) True LOC103047175
XM_015605682.2 mRNA downstream 160545 18200351 ~ 18214204 (+) True LOC103030877
XM_022669419.1 mRNA downstream 292668 18332474 ~ 18343461 (+) True LOC103032559
TU50074 other upstream 58099 17961940 ~ 17970999 (+) True G37155
TU50069 other upstream 68794 17952580 ~ 17960304 (+) True G37152
TU50046 other upstream 166032 17857917 ~ 17863066 (+) True G37131
TU50008 other upstream 309722 17718231 ~ 17719376 (+) True G37099
TU50007 other upstream 313106 17715129 ~ 17715992 (+) True G37098
TU50442 other downstream 45110 18084916 ~ 18092911 (+) False LOC103046566
TU50452 other downstream 67758 18107564 ~ 18113926 (+) True G37404
TU50609 other downstream 331572 18371378 ~ 18376345 (+) False G37531
TU50610 other downstream 331572 18371378 ~ 18376345 (+) True G37531
trnag-ccc other downstream 857496 18897302 ~ 18897372 (+) True trnag-ccc

Expression Profile