RNA id: XM_022669250.1


Basic Information

Item Value
RNA id XM_022669250.1
length 1944
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC103047175
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18171354 ~ 18185983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatatactgtaacaaAGACACTGTACAGTACAGACTCTGGTCTAGACttccaaaagtaaaaaaaaaatcaatattaattcttaaatattaaatattaatgattaaaatattttagtatataaGTTTGAAAGACTTTAAAAGACTGGAAGAGCTATATTCAACTCTATAACTCAGCAGCACTATAGGcctgcatttttattattttattattatttaattattttatattattaatgttattaatattaatttataatatgcTGCTTTTCTGATTCTGTGCTGacaactctctcactctctctttctctctttttctccaccTCTCCATTATCTCTCCACTTTTCACTGCCCCCCTTCCTCCCCCCTCCCTCCTTTCTCTGACATTAAGTTCAAACTTGACACTGATGTTGACTCACTgtgtcatctctctctctctctctttccctctcccactctctcttttaatctctctctctctctctatctctccctttttctctctctctctctatctctctcgctccGAGGACAGAAGAGCCTGCAGACGCATTTCTCTCTCcagccctccctccctctcttcatccctctctctctttctctctctctctttctctcccattctctctACTGCTGTCTCTTCCACGTAGAGTCCATTGTCAACAAAGGGAACACACAGCAGGGCTGTGGAGAGGAGGGATGACTCCAGTGTCACGTTGGCTGAGGTGTCGCTCGTAATTCCGTCTTTTGgtaGCACAGGTGAGCGTATGATGTATGAGAAGTTAACTATGCTGAATCTGCAGAGCAGCTCAAACTGGAATGGGCCCAGTGACTGGTACCATCAGCAGAATCCAGTTCCAGCCCAGCATAGCACAGTGTCGGAGGGCTGTCTGGTGGAGCCTGATGTTGGGTTGGGTgtagcaggaggaggaggaggaggaagagggcaGGTGGAGAGGGATGAAGGTGAGGAGTCGCAGCTGCGGCTGCAGCTGAAGAGGAAACTGCAGAGGAACCGAACCAGTTTTACCCAGGAGCAGATCGAGGCCCTGGAGAGAGAGTTTGAAAGGACGCATTACCCCGATGTCTTCGCCAGAGAGAGACTAGCAAACAAAATAGACCTTCCAGAAGCACGGATACAAGTGTGGTTCTCCAACCGACGAGCCAAGTGGAGGCGAGAGGAGAAGCTGCGGAACCAGAGGAAGTCAGGGGGCGGGACTTCCTGCGGCCAAGCGCACACCCCACTGAGCACCTCCTTCAACTCGGCCATCTACCATCAGTCACACGGCGGCGGCGCAGGGTCCATGCTAGGTCAAAGTGAGACCACTCTCCCCACCTACAGCTCTCTCTCAGTCTACTCTGGAGTTCAGTCAGCTCCTCCTCAGTCCACCCCCTCTTATGCATGCATGCTGCCCCCGTCCCCCTCCGCTCCTCGGCCTTTTGAGGCCTCGTCGTACCCCTCGGCCCACCTCCCTCCTCCCACTACAGCAAACACCAGCACAGGTTTGATCTCTCCAGGGGTTTCGGTACCTGTCCAGGTTCCGGGGAATGAGCAGAGCATGGGGCAGAACCTGGGGCAGTACTGGGCTCGACTGCAGTGAAGATAAAGCAAGTGATGGAGGACAGGAAGGAAGTGAGAGAAGCTGTGGACAAAAGCTCAGCGTGTGCTATTTAGAGACACAATAAACAAAGCGAAGAACAAACAGGGTTTTAGACTCGTACagactgcagcagtgctgtaaAACCTCCTGAATTAGGTGTTGAGAGCGGTCAGGGCTGGGCAACATGACAACAGGCCAGAATTTCTTCAAATCCAATGTAATTAAGTCTTATTCATGATGCCACAGTGCAGGAACTGGCAGAGGTGTCAGGTATTGACCTTTCTACtccttatatttaaaaaaatagcctcgttactattacctatttcatttcagcttgttttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50461 lncRNA upstream 11320 18151368 ~ 18160034 (+) True G37413
TU50459 lncRNA upstream 28976 18142004 ~ 18142378 (+) True G37411
TU50458 lncRNA upstream 43794 18127100 ~ 18127560 (+) True G37410
TU50435 lncRNA upstream 117799 18052536 ~ 18053555 (+) False G37394
TU50433 lncRNA upstream 118487 18051698 ~ 18052867 (+) True G37394
TU50474 lncRNA downstream 6627 18192610 ~ 18217283 (+) True G37424
TU50475 lncRNA downstream 19838 18205821 ~ 18217283 (+) False G37424
TU50540 lncRNA downstream 46613 18232596 ~ 18246900 (+) True LOC111192384
XR_002649890.1 lncRNA downstream 46643 18232626 ~ 18246172 (+) False LOC111192384
TU50541 lncRNA downstream 57138 18243121 ~ 18253772 (+) False LOC111192384
XM_007248723.3 mRNA upstream 32476 18128440 ~ 18138878 (+) True mapk7
XM_022669246.1 mRNA upstream 71375 18063983 ~ 18099979 (+) True LOC103046566
XM_015605694.2 mRNA upstream 131548 18029098 ~ 18039806 (+) True LOC103029386
XM_022669243.1 mRNA upstream 246384 17916864 ~ 17924970 (+) True LOC103030008
XM_022669231.1 mRNA upstream 267645 17896790 ~ 17903709 (+) True nif3l1
XM_015605682.2 mRNA downstream 14368 18200351 ~ 18214204 (+) True LOC103030877
XM_022669419.1 mRNA downstream 146491 18332474 ~ 18343461 (+) True LOC103032559
XM_007248734.3 mRNA downstream 234210 18420193 ~ 18449203 (+) True LOC103034039
XM_022669443.1 mRNA downstream 332925 18518908 ~ 18529955 (+) True LOC103021514
XM_022669273.1 mRNA downstream 347551 18533534 ~ 18583781 (+) True LOC103021833
TU50452 other upstream 57428 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 78443 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 200355 17961940 ~ 17970999 (+) True G37155
TU50069 other upstream 211050 17952580 ~ 17960304 (+) True G37152
TU50046 other upstream 308288 17857917 ~ 17863066 (+) True G37131
TU50609 other downstream 185395 18371378 ~ 18376345 (+) False G37531
TU50610 other downstream 185395 18371378 ~ 18376345 (+) True G37531
trnag-ccc other downstream 711319 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 1143385 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 1295073 19481056 ~ 19484915 (+) True G37812

Expression Profile