RNA id: TU50461


Basic Information

Item Value
RNA id TU50461
length 687
lncRNA type inter_gene
GC content 0.56
exon number 5
gene id G37413
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18151368 ~ 18160034 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTCCCCCCAGCCGGTGATGGTGCACTGCGTGCCTTCAGCAAACTGCATGTCTGAATCCGGCAGGCAGATGGGCTGGATGACTTCACTCCAGGTGACTGGTGAGCTTAGCATCACCAGAGCTATGTCCTCGCCTAGCTCGGCGTCTGTGTAGCCGAAAGGAACCACAATCTGTTTGATTTGGCGCTCCATCTCGTGTGGGTTCCAGCCATGTAGTTGCAGTCTACCTGCGTAGACATTGTAGGGGGACACGTCGGATGGATTAGGAAAACAGTGAGCTGCAGAAAGTACCCAGTTCTCACTGATGAGTGTCCCTCCACAAATATGCTCTGACTTTttCTGTATGTCCACCTGCCACGGCCAGTGACCCTCTGAAGCATCGGTTCCCCCGACTATCCTGCTCTGCACACCACGACCACATTCTTGGGCTTTACTCGTCGTCCACAGACCTGCCAGAACCAGCAGAACCGCCCCCAGAACCCGAGCACGAGACCACCGACCCATCCTCAAACTaatccagaaccagaaccagaaccagaacaatTAGACCAGCTGAACCGGAGCGGAGCTGAaccggagcggagcggagcgggaGCTGCTGAGGAGCcgcagtgagagagaggaggagcgGCGGAGTTTCGGTCCCGAGACGCGGAGCGAGTTTCACCACCAACAAAATACCTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50459 lncRNA upstream 8990 18142004 ~ 18142378 (+) True G37411
TU50458 lncRNA upstream 23808 18127100 ~ 18127560 (+) True G37410
TU50435 lncRNA upstream 97813 18052536 ~ 18053555 (+) False G37394
TU50433 lncRNA upstream 98501 18051698 ~ 18052867 (+) True G37394
TU50434 lncRNA upstream 98501 18052536 ~ 18052867 (+) False G37394
TU50474 lncRNA downstream 32576 18192610 ~ 18217283 (+) True G37424
TU50475 lncRNA downstream 45787 18205821 ~ 18217283 (+) False G37424
TU50540 lncRNA downstream 72562 18232596 ~ 18246900 (+) True LOC111192384
XR_002649890.1 lncRNA downstream 72592 18232626 ~ 18246172 (+) False LOC111192384
TU50541 lncRNA downstream 83087 18243121 ~ 18253772 (+) False LOC111192384
XM_007248723.3 mRNA upstream 12490 18128440 ~ 18138878 (+) True mapk7
XM_022669246.1 mRNA upstream 51389 18063983 ~ 18099979 (+) True LOC103046566
XM_015605694.2 mRNA upstream 111562 18029098 ~ 18039806 (+) True LOC103029386
XM_022669243.1 mRNA upstream 226398 17916864 ~ 17924970 (+) True LOC103030008
XM_022669232.1 mRNA upstream 247659 17896892 ~ 17903709 (+) False nif3l1
XM_022669250.1 mRNA downstream 11320 18171354 ~ 18185983 (+) True LOC103047175
XM_015605682.2 mRNA downstream 40317 18200351 ~ 18214204 (+) True LOC103030877
XM_022669419.1 mRNA downstream 172440 18332474 ~ 18343461 (+) True LOC103032559
XM_007248734.3 mRNA downstream 260159 18420193 ~ 18449203 (+) True LOC103034039
XM_022669443.1 mRNA downstream 358874 18518908 ~ 18529955 (+) True LOC103021514
TU50452 other upstream 37442 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 58457 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 180369 17961940 ~ 17970999 (+) True G37155
TU50069 other upstream 191064 17952580 ~ 17960304 (+) True G37152
TU50046 other upstream 288302 17857917 ~ 17863066 (+) True G37131
TU50609 other downstream 211344 18371378 ~ 18376345 (+) False G37531
TU50610 other downstream 211344 18371378 ~ 18376345 (+) True G37531
trnag-ccc other downstream 737268 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 1169334 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 1321022 19481056 ~ 19484915 (+) True G37812

Expression Profile