G37424


Basic Information

Item Value
gene id G37424
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18192610 ~ 18217283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50474
actgcactacTTGCTGGAATACTTTGAGATAGCTGGCCTTTTACTCTGTGAACACAGTACATTATCACAACAATTCAAATGTTTCAAACCTGTTTATGTTCAgtgtttgtttagattttttaaaggtAATCCATATccaacatttatttttgctcttAAGCTGATGCACAAGCAAAAAAGAGCAGTGCTTCACaggaagtttcggtttcatcttttACAGCTTCtcagaaattatcaagtttccAGTTCCACTGGCGGATATCTGGGCTTATGACAAAGAAACCGTTTACGCTGTGAAACAATTGTGAAAATGGTACATTATTTGCCAATGCGTACAGTTTGGTTTAAATGTTTGGTTTCTTCaatagtttaaatagtttttttttggtttagttcAGACGTAGACCATTTGCAATAGGTGCTTTCCAGTTTAGTTTGAACTGAGAAGTGACCCAAATATCCCCAAAAGTGTTTCCTTTTTATCCTGCCACTGAAAACCTCCCGCACTTCTGCTGTCCATTTTCACTTCTCCTCACTGTACATTTATGGTAAATACCGGGATGGATTGGCATACAAGACACATCAGTCAGCTCTGAACTTACTATATATTGCAATAAGTTTTAGAATTAACCACTCAAATGGGAAAAATAATAACTACTAAACATGTTGTGCttattgtttggttttattCAATACATTGTGTAGAACTATGCAACTACCTGCAATACGCTTCAATAAAAGCTTAATTCAAGCAGTGATCTCAGTTACAGGGAAAGGGCAGGGAACATCAtgcacttttatttatattttttatgttttaatttcagTTGGCATTTCTGTCTGATTgctgtttctctttatttactcattaaTAGAgagatttgtgttttattaaagtcacaTTTTCTGCAAGATGCTTCATGGATCTACATGACAGAACTCATCTGTTGAACCTGTAGAGACTGAACTCAATTCTGCAATGGCAATAatgtgctttctttctttcttaactTTTTCTTAAGAGGAACGTTTCACTCATTTCAATGCAGTTTAACAAGCAATTCAGGTAACATGTCCGGTATGGCTCCATGTTGGCCAACATAAGGATGACCAAGAGATTAAAAATAGGCCTTATCTAGATGTTACCCTGCACACACAGTGAGATTAATGCTGTAATGCCCATATACTtgtacatctaaaaaaaaatagaatatcattgaaaagttactgtattaaacacagagtgatctattttaagtgtttatttcttttatagttgatgattatggctacagccaatgaaaacccaaaaattagtgtctcagaaaatgtgtatattatataagaccaattgatactttgggcagtgtgccaagtcctgctggaaaatgaaatctacatcttcataaaagttgtcagtagcagagggaagcatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctccgaaccatcactgattggtggaaacttcacactagacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttcatttacaaatgaagtgtaaaatttactgatgatcagggatggtttggagagacatgtcatctgcttgtTGTTTTATggtgatgcagatttcattttccagcaggacttggcacactgccaaaagtaccaattggtcttatagtattctaattttctgagacactgatttttgggattttcattggctgtaagccataatcatcaacaataaaataaataaacgcttaaaatggatcactctgtgtttaatacatctataacaCCTCAGGCCTTGCTCCACAGCCTAGTTGCTCCTCTCTGCAAGTGACAATCATTATTAAGGAGTACTATACATAACTGGTAGCACAACTTGTGGATGTATATTTAATGCCAGTAAGGTTCgtcttttcttatatttatctctttgctaattcagctgttttttactcttctttctatttaaaatgttttggctCAAATTCAAATTAAAGTTTCTTTTCCAATTTT
>TU50475
gcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatctacatcttcataaaagttgtcagtagcagagggaagcatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctccgaaccatcactgattggtggaaacttcacactagacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttcatttacaaatgaagtgtaaaatttactgatgatcagggatggtttggagagacatgtcatctgcttgtTGTTTTATggtgatgcagatttcattttccagcaggacttggcacactgccaaaagtaccaattggtcttatagtattctaattttctgagacactgatttttgggattttcattggctgtaagccataatcatcaacaataaaataaataaacgcttaaaatggatcactctgtgtttaatacatctataacaCCTCAGGCCTTGCTCCACAGCCTAGTTGCTCCTCTCTGCAAGTGACAATCATTATTAAGGAGTACTATACATAACTGGTAGCACAACTTGTGGATGTATATTTAATGCCAGTAAGGTTCgtcttttcttatatttatctctttgctaattcagctgttttttactcttctttctatttaaaatgttttggctCAAATTCAAATTAAAGTTTCTTTTCCAATTTT

Function

GO: NA

KEGG:

id description
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU50474 True 2111 lncRNA 0.36 2 18192610 18217283
TU50475 False 757 lncRNA 0.38 2 18205821 18217283

Neighbor

gene id symbol gene type direction distance location
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding upstream 6627 18171354 ~ 18185983 (+)
mapk7 NA coding upstream 53732 18128440 ~ 18138878 (+)
LOC103029386 NA coding upstream 152804 18029098 ~ 18039806 (+)
LOC103030008 NA coding upstream 267640 17916864 ~ 17924970 (+)
nif3l1 nif3l1 coding upstream 288901 17896790 ~ 17903709 (+)
LOC103032559 LOC108441169 coding downstream 115191 18332474 ~ 18343461 (+)
LOC103034039 LOC108441161 coding downstream 202910 18420193 ~ 18449203 (+)
LOC103021514 NA coding downstream 301625 18518908 ~ 18529955 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding downstream 316251 18533534 ~ 18583781 (+)
cd79b NA coding downstream 374622 18591905 ~ 18598830 (+)
G37413 NA non-coding upstream 32576 18151368 ~ 18160034 (+)
G37411 NA non-coding upstream 50232 18142004 ~ 18142378 (+)
G37410 NA non-coding upstream 65050 18127100 ~ 18127560 (+)
G37391 aldoa,aldoab,LOC107720037,LOC107654538,LOC107581735,LOC107674678,LOC107660459 non-coding upstream 136755 18042968 ~ 18055855 (+)
G37394 NA non-coding upstream 139055 18051698 ~ 18053555 (+)
LOC111192384 NA non-coding downstream 15313 18232596 ~ 18253772 (+)
G37492 LOC108441156,LOC108274106 non-coding downstream 69620 18286903 ~ 18289386 (+)
G37501 LOC108441156 non-coding downstream 96023 18313306 ~ 18317952 (+)
G37534 NA non-coding downstream 169131 18386414 ~ 18386652 (+)
G37557 NA non-coding downstream 252876 18470159 ~ 18472573 (+)
G37404 NA other upstream 78684 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 92631 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 221611 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 232306 17952580 ~ 17960304 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 329544 17857917 ~ 17863066 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 154095 18371378 ~ 18376345 (+)
LOC103022762 NA other downstream 428352 18645635 ~ 18707728 (+)
G37749 NA other downstream 1112085 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 1263773 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 1271616 19488899 ~ 19511441 (+)

Expression


Co-expression Network