RNA id: TU50458


Basic Information

Item Value
RNA id TU50458
length 461
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G37410
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18127100 ~ 18127560 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTTCTGTTTGTCTACTGTGTGGACAGGTAAGATGGGCGccctacatttacacacacgcaGGAGCACTTTTGTTTAAACACACTAGGTTAGGGGTCGGGTGCTACTTCCTGTATTTtggttagtttagttttttggttaggcagtttagtttgttttattattttcttttcgtTAGCACCGTCCTTTAGTCCACCTTTAGATATTACAGTTtctgttgatttattttctctACGATACACTTTCTAGTTTTGTTATCAACATACTTAATTGctttattctctttatattCAGTTTATTCACTTATTTTCTGATCCattgtatatttgtgttttatactttgacttttgtaataaatttcattttgttttaccGCCAATTGTTGTCCTCCCACTTCCTCCTCATCACATGCATTAATGTTACTCCTCCTCACCCCTAGATAAAAGGGGAGGAGCATAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50425 lncRNA upstream 71245 18042968 ~ 18055855 (+) True G37391
TU50435 lncRNA upstream 73545 18052536 ~ 18053555 (+) False G37394
TU50433 lncRNA upstream 74233 18051698 ~ 18052867 (+) True G37394
TU50434 lncRNA upstream 74233 18052536 ~ 18052867 (+) False G37394
TU50423 lncRNA upstream 80687 18044625 ~ 18046413 (+) False G37391
TU50459 lncRNA downstream 14444 18142004 ~ 18142378 (+) True G37411
TU50461 lncRNA downstream 23808 18151368 ~ 18160034 (+) True G37413
TU50474 lncRNA downstream 65050 18192610 ~ 18217283 (+) True G37424
TU50475 lncRNA downstream 78261 18205821 ~ 18217283 (+) False G37424
TU50540 lncRNA downstream 105036 18232596 ~ 18246900 (+) True LOC111192384
XM_022669246.1 mRNA upstream 27121 18063983 ~ 18099979 (+) True LOC103046566
XM_015605694.2 mRNA upstream 87294 18029098 ~ 18039806 (+) True LOC103029386
XM_022669243.1 mRNA upstream 202130 17916864 ~ 17924970 (+) True LOC103030008
XM_022669231.1 mRNA upstream 223391 17896790 ~ 17903709 (+) True nif3l1
XM_022669232.1 mRNA upstream 223391 17896892 ~ 17903709 (+) False nif3l1
XM_007248723.3 mRNA downstream 880 18128440 ~ 18138878 (+) True mapk7
XM_022669250.1 mRNA downstream 43794 18171354 ~ 18185983 (+) True LOC103047175
XM_015605682.2 mRNA downstream 72791 18200351 ~ 18214204 (+) True LOC103030877
XM_022669419.1 mRNA downstream 204914 18332474 ~ 18343461 (+) True LOC103032559
XM_007248734.3 mRNA downstream 292633 18420193 ~ 18449203 (+) True LOC103034039
TU50452 other upstream 13174 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 34189 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 156101 17961940 ~ 17970999 (+) True G37155
TU50069 other upstream 166796 17952580 ~ 17960304 (+) True G37152
TU50046 other upstream 264034 17857917 ~ 17863066 (+) True G37131
TU50609 other downstream 243818 18371378 ~ 18376345 (+) False G37531
TU50610 other downstream 243818 18371378 ~ 18376345 (+) True G37531
trnag-ccc other downstream 769742 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 1201808 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 1353496 19481056 ~ 19484915 (+) True G37812

Expression Profile