RNA id: XM_022669231.1


Basic Information

Item Value
RNA id XM_022669231.1
length 1446
RNA type mRNA
GC content 0.50
exon number 7
gene id nif3l1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17896790 ~ 17903709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAATCAGCTCTCGGCTTGCTGGTCGGCCCCGCCCCCCGCTTCTGCACATGTGTATGGTGCTGGGGCTTCATCCATGATTCCTGGGTGTAGGATTGTGACCAGAAGACTCTTCAACCTGAGACATTGTCTGTCTTCCCTAAACCCCAGCTGTCATCCTCGCCACCTCTCTCAGTCAGGCCATTGTAACGTTTCCATGGATTTAAAGGGAGTTTTAGGGGTTCTTGAGCAACTGGCTCCACTCTCACTGGCAGAATCATGGGACAATGTCGGCTTATTGGTTGAACCCAGCAGACCACGGCCCATCAAAACCATCCTCCTCACCAATGACCTCACGTCTGCCGTCATGGACGAGGCTGAGGAGATGGCATGTGACCTTGTCATCTCGTACCACCCACCTCTATTCCGGCCTTTCAAACGACTGCTCCAAAAAGACTGGAAGCAGCGATTGGCCGTCAGAGCTGTAGAAGGCGGGATTGCAGTCTTCTCCCCACATACATCATGGGACAGCGCCAAAGACGGCCTTAATGACTGGCTGATAGGAGGATTGGGTCATGGACAAGTGTCCGTATTGAGCCAAGCTCTCTGCAGCGCCCCTCAGAGGCATCGGGTGGAGTTCACTGCTGGAAGTCAAGTGGAGCTCGACAGTATCTTGAAGCTGCTGAAGGAGACAGAAAACAGTGAAGCATTTCAGTACACTCTGCTTAGGAATGAGGAGGGCGGTCAGCAAGTGATCCTGACCTGTCCCGGCTCAGCTCTGACCCCTGTCGTTCAGACTGTGTTAGGAAATGTCTCAACCAGCCAGTCCCTCAGCATCACGCAGGTCCAGCAGAACCCTATGCTTGGCTGTGGTCAAGGACGACATGTGGTTTTGGACGAGCCTCTCTCTGTGGGCGTGGCAGTCCAGAAAATGAAGACGCACCTCGGCTTGCCTCACCTCAGACTTGCCCTGGGAGAGCAGAAAACATTAGATGCTGTTGTGAAgagtgcagcagtgtgtgctggcTCAGGAGCTTCTGTCCTACAGGGAGTCAAGGCAGACCTCTACATCACAGGTGAGATGTCCCACCATGAGGTCCTGGACGCTGTCGCTAACGGAACCAGTGTGATCCTGAGTGACCACAGCAACAGCGAAAGAGGCTTTCTGACTGTGATTAAACAGCGTCTGGCCAATCATCTTCCAGATTCTGTTACTATAGCGATCTCCAAAAGAGACCGAGACCCGCTGGAGGTGGTCTGACACTCGTGGACCCTCAAGAATTATCCCATACCTCCCATACCATCCCATGCTTTATCAAGTAAATTGGAATTGGAGTCACTTTAAATACAGCAGTAACAACATGGATTTcattaacatataaaacaaatacaagttACATTTTGATCAAgaagctgttaaataaatatgtttagattaaaaaaaggttaataaaTATACTACAATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50053 lncRNA upstream 3828 17892662 ~ 17892962 (+) True G37137
TU50035 lncRNA upstream 68122 17822411 ~ 17828668 (+) True G37120
TU50021 lncRNA upstream 102989 17792026 ~ 17793801 (+) True G37108
TU50006 lncRNA upstream 182699 17713885 ~ 17714091 (+) True G37097
TU50005 lncRNA upstream 183103 17713461 ~ 17713687 (+) True G37096
TU50057 lncRNA downstream 9113 17912822 ~ 17913085 (+) True G37141
TU50068 lncRNA downstream 38139 17941848 ~ 17949188 (+) True G37151
TU50072 lncRNA downstream 39949 17943658 ~ 17944500 (+) True G37153
TU50075 lncRNA downstream 64207 17967916 ~ 17970999 (+) False G37155
TU50425 lncRNA downstream 139259 18042968 ~ 18055855 (+) True G37391
XM_022669230.1 mRNA upstream 8541 17878595 ~ 17888249 (+) True cabp5
XM_007248683.3 mRNA upstream 94173 17796834 ~ 17802617 (+) True pagr1
XM_007248680.3 mRNA upstream 188196 17705679 ~ 17708594 (+) True LOC103045739
XM_007239746.3 mRNA upstream 362513 17521497 ~ 17534277 (+) True g6pc3
XM_007239745.3 mRNA upstream 365992 17521499 ~ 17530798 (+) False g6pc3
XM_022669243.1 mRNA downstream 13155 17916864 ~ 17924970 (+) True LOC103030008
XM_015605694.2 mRNA downstream 125389 18029098 ~ 18039806 (+) True LOC103029386
XM_022669246.1 mRNA downstream 160274 18063983 ~ 18099979 (+) True LOC103046566
XM_007248723.3 mRNA downstream 224731 18128440 ~ 18138878 (+) True mapk7
XM_022669250.1 mRNA downstream 267645 18171354 ~ 18185983 (+) True LOC103047175
TU50046 other upstream 33724 17857917 ~ 17863066 (+) True G37131
TU50008 other upstream 177414 17718231 ~ 17719376 (+) True G37099
TU50007 other upstream 180798 17715129 ~ 17715992 (+) True G37098
TU49999 other upstream 188193 17705706 ~ 17708597 (+) False LOC103045739
TU49885 other upstream 614559 17279661 ~ 17282231 (+) False LOC103027613
TU50069 other downstream 48871 17952580 ~ 17960304 (+) True G37152
TU50074 other downstream 58231 17961940 ~ 17970999 (+) True G37155
TU50442 other downstream 181207 18084916 ~ 18092911 (+) False LOC103046566
TU50452 other downstream 203855 18107564 ~ 18113926 (+) True G37404
TU50609 other downstream 467669 18371378 ~ 18376345 (+) False G37531

Expression Profile