RNA id: TU50006


Basic Information

Item Value
RNA id TU50006
length 207
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G37097
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17713885 ~ 17714091 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGTGACTGGGAGGATGTCCAGTCTCTGGAGGCTGTTCCTGCGAGAGGAAGGGAAAGGCCCCCCTTTAGAGAGTCGACGCTGCCGGCTGGACAGCATGGCCGCCGGAGACACGATGCAGGGAGGAGGAACTTTCCCCATCCTCTCATACAGCTCCTCTATCTCCCGCTTCTGCACCGCCTGCAGAGACTGCACCTCACACAGGTGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50005 lncRNA upstream 198 17713461 ~ 17713687 (+) True G37096
TU50001 lncRNA upstream 4049 17684712 ~ 17709836 (+) True G37092
TU49996 lncRNA upstream 15233 17693790 ~ 17698652 (+) True G37089
TU49973 lncRNA upstream 196296 17509967 ~ 17517589 (+) True G37068
TU49972 lncRNA upstream 203141 17509967 ~ 17510744 (+) False G37068
TU50021 lncRNA downstream 77935 17792026 ~ 17793801 (+) True G37108
TU50035 lncRNA downstream 108320 17822411 ~ 17828668 (+) True G37120
TU50053 lncRNA downstream 178571 17892662 ~ 17892962 (+) True G37137
TU50057 lncRNA downstream 198731 17912822 ~ 17913085 (+) True G37141
TU50068 lncRNA downstream 227757 17941848 ~ 17949188 (+) True G37151
XM_007248680.3 mRNA upstream 5291 17705679 ~ 17708594 (+) True LOC103045739
XM_007239746.3 mRNA upstream 179608 17521497 ~ 17534277 (+) True g6pc3
XM_007239745.3 mRNA upstream 183087 17521499 ~ 17530798 (+) False g6pc3
XM_015603207.2 mRNA upstream 222821 17483919 ~ 17491064 (+) False tmem101
XM_007248683.3 mRNA downstream 82743 17796834 ~ 17802617 (+) True pagr1
XM_022669230.1 mRNA downstream 164504 17878595 ~ 17888249 (+) True cabp5
XM_022669231.1 mRNA downstream 182699 17896790 ~ 17903709 (+) True nif3l1
XM_022669232.1 mRNA downstream 182801 17896892 ~ 17903709 (+) False nif3l1
XM_022669243.1 mRNA downstream 202773 17916864 ~ 17924970 (+) True LOC103030008
TU49999 other upstream 5288 17705706 ~ 17708597 (+) False LOC103045739
TU49885 other upstream 431654 17279661 ~ 17282231 (+) False LOC103027613
TU49869 other upstream 479335 17232879 ~ 17234550 (+) False cby1
TU49795 other upstream 508852 17201497 ~ 17205033 (+) True phf5a
TU49799 other upstream 695001 17002440 ~ 17018884 (+) False sun1
TU50007 other downstream 1038 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 4140 17718231 ~ 17719376 (+) True G37099
TU50046 other downstream 143826 17857917 ~ 17863066 (+) True G37131
TU50069 other downstream 238489 17952580 ~ 17960304 (+) True G37152
TU50074 other downstream 247849 17961940 ~ 17970999 (+) True G37155

Expression Profile