RNA id: TU50035


Basic Information

Item Value
RNA id TU50035
length 6237
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G37120
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17822411 ~ 17828668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attaatattttttttccttttactggATCCaagactaatatttaaaatacctgtttattttttaagtgttttacgAATTAAAATGTGGAGAGTGGTACAATAAGGCATTGAGATGCAGTGCCAGAACTGTACTGATTCCTATCGAAGAGGTATTATTTCAGCTTAAtgctaaattaaaaaacaaatacaacctAAAGATGATTCCAAAACAAATGTGGTTCTAAATAAGAACAAAAAGATCCAATTAAGAAAAATTAAGTTAGTGTATAAGCAgagaatatacagtaccaaCATTAAACTCATCAAACAAATCACTCCAGTACAAAACcaggatttaatttttttctttccccccAAATATCACTTTTTAAATTCTGAACGGAGAAATCAGACGCTCATTTCTGGGTTTTAAGGTCAGGATCATTTGACGAAGCCCTTCGTTCAAACACttgattcacacattcacaacAGAAACAACAATGAGAAAATAGTCACGGGCTaaaggtaattttttttgtcttcttggAAGCAGAAAAAGATGCATTCATTCagtttgagggttttttttcacttaaggaaagaaaaataaaactagtTAGTTTATCTAGTTACATTTCTTTCCAAAGTCTTAATGTGAGATCTTGCTGGACCAACTCAAAAGTTAGTgtgaaaatggcaaaacactGAGGAAACTAAACTAATCTAACAGGAGAACAGATATCCTGCTGAACGCCTTTAAGGTGTCAGACAATCCTGAATTCATTTCCTGCTCTGTTTACTTTATCCAGCCACCAAAGCCAGAAACGTACTTTACGCAAGTGTGTGAACACAAACGCTTCAAGCTACGCAGCAAATACAAGAACAATCTGCATTCAGCAGGACAAACCCACAACCAAAATATGCATCTTAAATCTATTGTAATTTGAGTTTATTCaaatgtttgtctgtttttattagCAGTTTTTAATATCCTGCACTATAAGATCTTTTGTCCGTCATAATACTGTTATAAATATTGAgaatcataaaaatataaagtaatatttttgacattttttctaATCTTAACATCCACCATGCAAAAAATTACAATGGTGGACTTCTTTAATCAGGCTGCTCAAAAACATAACAGTTAATAACCAACATGCAACTAAACCTAATATCAATATTGCTAAACGATAATTTACAATTGTTTGGcgtttaaaaaattacaatcgGTAAACGTAGGATAGTAAGtgtaaaacagattaaaaaccCTGAAAATGGAAGACAGATTAATCATAAATCTGTAAAGGCTAAATTGGACATGACTAAACAAACTTCCACATTTTTTGCTtgtaactataaattaaattatttttacattttccatcATCTCTTCGATAATTAAggtatttatttactgaattaCTCAGATTCCCAACATCTACCTAGAATCAACATAAAACCTCTGGAGCTCAACACGCTTGCAGGAGAACACTAGCTGCTAAATCTGTTTGGTCGGCTAACAGCCACTCTTTCTGTTAGgattattctaatattttaacatattaacatttacTACAagttttcatgatttttatttttatttgagctgGTGGTTCTCAAAAAATGGGCTATTTGGGAGTTGCTGAGAACAACTGATGCAATCACTCGATAACCATTACCACGTTTTGAGCCGGTTCTCCAATCCATACTCTACTGTCCTGCTGCTGGCGTTTGTGGACTTGCGTGAAGCATGTTTCTGGCATAGCATTCTAGACAGTTCCCCTATCTGTCCACATTACATAATACACACTTCGGTACACACACATCCCCAAAGCACCGCTCAGGCAAGCATTCCCTTGAGCTcccttgagtgtgtgtgtgtttggggggaaTTTCATTTCTGGAGGAAAGTGACTGATTTATTGAGAAAATCTTTGCTCCTTCCCTCTTGCCTTCCCGCAACACCCTGGTTTACACCCTGTCTTTCACCAGAGATGCACCCAAACTAAATTACAGGACCAATAATATCAAACACCCTACTGTGTTCGATATTAGTAACAGCTAATTCACAGATAAATTTTGTGACAGTGACAAGTTTAAACTCTAAACAGATGcaattaatgcatttaatacAGCCATAAATAATACTATTTATAATAAGCAAAATCTGACATTACTGTAAACAGTTAccttttttgtaaatgtgttataaatatttCCTATATGCGCCTTTTCAGACCCACCTGCAGGTGATTGTAACATTCATAAAAGCTCTTTAGAGCTCTAATTTATCCGTATTAATGTTTCACTGTAATTCTTCCCAGTCTGGGtgataataatgattaatttttttaatctcctctatttttttaaatattttttttgcttctttgtAGTTTAGGCCGGACATTGTCTACAGTATTTTAGCCTGATTTAACCCCAAATAGCCTTTTCGAACAGCTCAGAAGTGAATTTCTAGAGAAGAAAATACCAGAAATGTTTAGTCACAGTTATTGCTGCAAAGAGGGCTCACACCAGATAAACATACTTTCGCAactcacaaatatgtaaaatttaatcattttactcAATGAATAAATGgccaagtataatatatttgtctcatttgtttaaatgggtcttctttatctacttttaggaatCTGTTTGACTAAGTTTCAGcttggttagtttttttttaatatgctaAAAGACAGACCTGTCTTTCTCCTGTTCTGGTTGCTTACCAGACAAAAGTCTGCCCAAACAGCTTGTGTGCAATTTCATTTCTTCTAGATAAGTTGATAAGTGGTAAGTTGTGTAGAATAGAGAAAATCAGAGTGCATCTCCAGCAAAGGGGGTGAATGGGATGAGGGTGTGATCTGGAAGGTCAAGCAAACTGTCGTCACTCAGTCAAAGAGCAGAAACACTACAGTAGAGAGTCACAATCACAGTATCGTTAAAGAGTCCTGCAGCaagaaaagcaaagaaagattctgaaagaaaagagagagagaaccagccAGTGCAACAGTGCGATGTGGCATTTGTTTTTCCTACTTGGTACTGAAATCATTAGTCTCCATCTGCTCTAACGTCCATCTCAAAGCCTtctgttctccctgtgtctcaAGTCGGGCAAGACGAACTAGATTCCTAATCTACACACTGTGTCCTTTACTGTCCAAAGCCCAGACCGCAGTAAATTAGTATAATCTCAACTGGAGCAGTAATGATTTCCAGGTAATGGATATATCAGAGAACCTCACAGAGCTAAATCAAGTTAGCTAGATGCATGGTTGTTACAGCATTTTGCAGCATAATACTGCAAATACTAGAGCTGGCCCGAAGAGCATTTTACAAATTTAACCATTAAACCATAACTTTAAGTATCTTGGTTATCGAAGCTCAATTTAAATCCAGTAGAGGGCAGGGATGAACTAACAGTAAAGAGATGTGCAATGGtgcaaatgaactgaaattagctttgataatattaaatattaaatgatgTGATGCTAAGAGACAGTATGGGTACAGCATATATATAAGTTTACGCCACTACAGCACTACAAAACTTCGGTGGAGCTGAACAAGATCTCTCACAAAAACTGCTCAgtcatattagtgtaaaatcctgtacaATATTTCTAacgcctcagtccacatgcttctttcccAGTACAAACGTATGTGTACAGCTGTCCATGAGAGAGAGCTCATCAGGGgatttgtatttactgcagtggagTAAAAAATTgattgaagtaaaaaaaaaaaaaggacaaaatctAGCATAACGCTGCTTtgagacaaaataaataaatctcagAGTAAAGAATGATTACTTGAGGGTTAAAATGATTCGAGCCagccccccccaaaaaaactaaTATCACTGTATGGAAGGACGAACATGTCCAACTCGCATCTGAAAATTTAAACTGGAGGTTCCTCTGATGGTTCCACCTGTTCTACTCTACATGAGTATAGACTACAACATTCTACGCATCTTTTGACTGCAGTTCTAGCACGCATCTTCTGGTACCAACATGCCACTGCACTATAGAAGTATTCGATTTGAGACACAGTGTCCGTCATTACTCTACTCCTGCTGACCTCTCAGCAGTCTCACCTTGGCAAATCTGAGACAGTCCGTTGAACGTCCGCCAGCCGCACGTCTGCCATGGAGAGACGTGTGTAGCGTTTCTGCACGCATCGTGCATGTCTTACTGAGGTGACTTATTTGCTACAGTAGCTGCTGAGTTTCTGTACGAGTGCTGCTCAGCTAATTGTATGATGGCTCTGTTCACAGTATTTGCTCTAGTAGTGTGGTTTTCTATTGGAGGGTTATAGCATATAGCATTCTTATAAACATGTTCTAGGTATCAGTAAGGTATGTGCATGATGCACACTTCGCTAGCTTAGTGCGTGTagatgtgtgtgactgtgtacaCTGCCCATCAAAAGACTGAGAGAACTTAGTTTCCcaaaatattttctttcatacaaataaagagttttcttTATCAGAATGCAAAAATGAGCCGTACTGCCATGCCAACAGTTCTGCGTGTGCTCCAGCGCGCTTGCTCTCTAAACCCCTTTAGTGTCCCCACTTTGGGTCATCAGGCTAATGCAAGGCTGTGGACCGTGGCGTGCCTAGCGTGCAGCTCTTCACGCAATCAGGCTGCAAGTATGGATTGTGGGAGATTTCTCAGTTTCAGAAGGTCTGGTGTACATTAGTTTTGGAAGCAGGGGCAGCAGATAAAACACATGCAGTATGACAGGCCCATGTTTGggaaatgtttttctttgtgtgaataaataaaagcagtttTACAATTATTAAGCCGGCCCCTCTGTCCAGGCTGACTTTTGCATTAACCCTAATGCTATCCTGAGACTTTTTTTCAGCGACTCGCTGGCAAACagacattatttttatgtaaagacATACACtatcaaaaaaatcaaataaaaaaacagcccaGTCTCTATTTTTGCATTACAAAAAAAGcacagtgttcttttttttcttcttttttaattgtGCCTTTAATACTACttagttctgattggctgccctgtattttgtattgttcACACAGACGTGCAACAAGACTGAAATAGTAATGGAcctctaaaaaaaacatcactcgATCCTCTctactaaactgctgtaggctaatgGTACGTGTCCACTAGCACTTTTCTTCAACGCATTTCAATGTGCCGAATCTCTGGGTTCTCCGTGTGGGTGAGTCCATGACGGTTTTGAatttaaatgaagcaacagatgtaggaaatcataagtttaatatttaagatttttaatcaatCGCATTgtaatctatagttctataaattcATTTTACGTCATTTTTtgcttctcttctgtggttgaaaggcggctgttgtgtgtgtgtgtgtgtgtgtgaggcttgtatgtgtgtgaagtCGCAGCCTgctcatttgaataaagttgagctctgctgaactttttcactttttcagaGGGTGGGGCTGCGATCAATAGCCACtggcatgcagcggctctctctgttaaaattaaaaggATGCATCAAGGCTTAAGTGCTAGTGGACACGTAAGAGttggaatgggtggggttaatcTGCTTTTTTGTAAGTATGGACCTGAACTTTGTAAACTAGCAtgtaaactttacattttttaactttcacaatgttaatatacactacattaaagtctcatttttttttgtttccaaaaCTGCTAGGGCAATTTCAGGTCAGTTTTTATGATACAGCAACACTGCAGGCTGTTTTTTCTCACTtatctgaaaataaaagtgaaaagaaaaacattctaGACTGCTAAATGTCCCAAATCTTTTAccgggcagtgtgtgtgtgtttgtgtaagctGCAGTTACTAGCTCTGCGGCTGCTGGGCGATGCAGGAGCAGTCGGTGACCAGCAGGTCCACCACTGCGTTGCCACTGACGAAGACGGTGGGCGCAGAAGTCATGCTGCTCAGGGTCACTGTGCCGGCCGCCGATGCCACTCCGTCCGAGCTGCTGCTCACCGGCGCTGGGTCGTTCATTGGGGGGTTATGGGTGCCCATGTGGCCCTGCAGCTGCGTGGGGGTTTTGCAGTGGACACCACAAAGCTGGCAGACCAGAACTCCTCCGGCTCCGGCTGAGCCAAATCCACCACTGCTTTCCTTCCACTCCTGACCGTGGTGCTTCTGAGCGTGGATGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50021 lncRNA upstream 28610 17792026 ~ 17793801 (+) True G37108
TU50006 lncRNA upstream 108320 17713885 ~ 17714091 (+) True G37097
TU50005 lncRNA upstream 108724 17713461 ~ 17713687 (+) True G37096
TU50001 lncRNA upstream 112575 17684712 ~ 17709836 (+) True G37092
TU49996 lncRNA upstream 123759 17693790 ~ 17698652 (+) True G37089
TU50053 lncRNA downstream 63994 17892662 ~ 17892962 (+) True G37137
TU50057 lncRNA downstream 84154 17912822 ~ 17913085 (+) True G37141
TU50068 lncRNA downstream 113180 17941848 ~ 17949188 (+) True G37151
TU50072 lncRNA downstream 114990 17943658 ~ 17944500 (+) True G37153
TU50075 lncRNA downstream 139248 17967916 ~ 17970999 (+) False G37155
XM_007248683.3 mRNA upstream 19794 17796834 ~ 17802617 (+) True pagr1
XM_007248680.3 mRNA upstream 113817 17705679 ~ 17708594 (+) True LOC103045739
XM_007239746.3 mRNA upstream 288134 17521497 ~ 17534277 (+) True g6pc3
XM_007239745.3 mRNA upstream 291613 17521499 ~ 17530798 (+) False g6pc3
XM_015603207.2 mRNA upstream 331347 17483919 ~ 17491064 (+) False tmem101
XM_022669230.1 mRNA downstream 49927 17878595 ~ 17888249 (+) True cabp5
XM_022669231.1 mRNA downstream 68122 17896790 ~ 17903709 (+) True nif3l1
XM_022669232.1 mRNA downstream 68224 17896892 ~ 17903709 (+) False nif3l1
XM_022669243.1 mRNA downstream 88196 17916864 ~ 17924970 (+) True LOC103030008
XM_015605694.2 mRNA downstream 200430 18029098 ~ 18039806 (+) True LOC103029386
TU50008 other upstream 103035 17718231 ~ 17719376 (+) True G37099
TU50007 other upstream 106419 17715129 ~ 17715992 (+) True G37098
TU49999 other upstream 113814 17705706 ~ 17708597 (+) False LOC103045739
TU49885 other upstream 540180 17279661 ~ 17282231 (+) False LOC103027613
TU49869 other upstream 587861 17232879 ~ 17234550 (+) False cby1
TU50046 other downstream 29249 17857917 ~ 17863066 (+) True G37131
TU50069 other downstream 123912 17952580 ~ 17960304 (+) True G37152
TU50074 other downstream 133272 17961940 ~ 17970999 (+) True G37155
TU50442 other downstream 256248 18084916 ~ 18092911 (+) False LOC103046566
TU50452 other downstream 278896 18107564 ~ 18113926 (+) True G37404

Expression Profile