RNA id: TU50072


Basic Information

Item Value
RNA id TU50072
length 228
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G37153
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17943658 ~ 17944500 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGTTGGTAACCTTGCCTCTGCTGGTAACCGCCCCTCTGGTCTGAATCTCGTTGGTAACCTTGCCTCTGCTGGTAACCGCCCCTCTGGTCTGAATCTGCACAGTGAGAAGAGTTTATAGAGGCATGCAGCTGTGGATGCAGCGTGTAGATGATGGGCTATTCTACATTTTGCTGACATTCTGCCAACATCACTCAGACATGCAGTTCAACAATGACTGAAATAtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50057 lncRNA upstream 30573 17912822 ~ 17913085 (+) True G37141
TU50053 lncRNA upstream 50696 17892662 ~ 17892962 (+) True G37137
TU50035 lncRNA upstream 114990 17822411 ~ 17828668 (+) True G37120
TU50021 lncRNA upstream 149857 17792026 ~ 17793801 (+) True G37108
TU50006 lncRNA upstream 229567 17713885 ~ 17714091 (+) True G37097
TU50075 lncRNA downstream 23416 17967916 ~ 17970999 (+) False G37155
TU50425 lncRNA downstream 98468 18042968 ~ 18055855 (+) True G37391
TU50423 lncRNA downstream 100125 18044625 ~ 18046413 (+) False G37391
TU50433 lncRNA downstream 107198 18051698 ~ 18052867 (+) True G37394
TU50434 lncRNA downstream 108036 18052536 ~ 18052867 (+) False G37394
XM_022669243.1 mRNA upstream 18688 17916864 ~ 17924970 (+) True LOC103030008
XM_022669231.1 mRNA upstream 39949 17896790 ~ 17903709 (+) True nif3l1
XM_022669232.1 mRNA upstream 39949 17896892 ~ 17903709 (+) False nif3l1
XM_022669230.1 mRNA upstream 55409 17878595 ~ 17888249 (+) True cabp5
XM_007248683.3 mRNA upstream 141041 17796834 ~ 17802617 (+) True pagr1
XM_015605694.2 mRNA downstream 84598 18029098 ~ 18039806 (+) True LOC103029386
XM_022669246.1 mRNA downstream 119483 18063983 ~ 18099979 (+) True LOC103046566
XM_007248723.3 mRNA downstream 183940 18128440 ~ 18138878 (+) True mapk7
XM_022669250.1 mRNA downstream 226854 18171354 ~ 18185983 (+) True LOC103047175
XM_015605682.2 mRNA downstream 255851 18200351 ~ 18214204 (+) True LOC103030877
TU50046 other upstream 80592 17857917 ~ 17863066 (+) True G37131
TU50008 other upstream 224282 17718231 ~ 17719376 (+) True G37099
TU50007 other upstream 227666 17715129 ~ 17715992 (+) True G37098
TU49999 other upstream 235061 17705706 ~ 17708597 (+) False LOC103045739
TU49885 other upstream 661427 17279661 ~ 17282231 (+) False LOC103027613
TU50069 other downstream 8080 17952580 ~ 17960304 (+) True G37152
TU50074 other downstream 17440 17961940 ~ 17970999 (+) True G37155
TU50442 other downstream 140416 18084916 ~ 18092911 (+) False LOC103046566
TU50452 other downstream 163064 18107564 ~ 18113926 (+) True G37404
TU50609 other downstream 426878 18371378 ~ 18376345 (+) False G37531

Expression Profile