RNA id: TU50433


Basic Information

Item Value
RNA id TU50433
length 829
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G37394
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18051698 ~ 18053555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCTAAAGTATGATGTGTAGCTGCTGGTACAGAGTTTCTGGAGAACCAGTGATCTGCACAGAGTTAGAGCTGCTGATAAGGGAGCTGTGTCTGACTCTAATATAGTCATTAAGTTAAGTCGCTTTTTGtcggtaaaaataaatgtttaaatgttaaaaatacatcAGAATGCAGGAAAATGTATGGGGAGGACCCCcagactagagtttagattctctgcccgaacttTTAGTTTCCCCagattagagtttagattcccCAAACAAGAGTTTAGATTCCCCagattagagtttagattccccagactagagtttagattccccagattagagtttagattccccagactagagtttagattccccagattagagtttagattccccagactagagtttagattccccagactagagtttagattgcccagattagagtttagattccccagattagagtttagattccccagactagagtttagattcccctgattagagtttagattcccCAGACTAGAGTTTAGAATTCCCCagattagagtttagattccccagactagagtttagattcccCAGATAAGAGTTTAGAATCCCCtgattagagtttagattcccCAGATTAAGAtttagattgcccagattagagtttagattccccagactagagtttagattccccagactagagtttagattccccagactagagtttagattgcccagattagagtttagattcccctgattagagtttagattccccagactagagtttagattccccagactagagtttagattccccagactagagtttagattgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50423 lncRNA upstream 5285 18044625 ~ 18046413 (+) False G37391
TU50075 lncRNA upstream 80699 17967916 ~ 17970999 (+) False G37155
TU50068 lncRNA upstream 102510 17941848 ~ 17949188 (+) True G37151
TU50072 lncRNA upstream 107198 17943658 ~ 17944500 (+) True G37153
TU50057 lncRNA upstream 138613 17912822 ~ 17913085 (+) True G37141
TU50458 lncRNA downstream 74233 18127100 ~ 18127560 (+) True G37410
TU50459 lncRNA downstream 89137 18142004 ~ 18142378 (+) True G37411
TU50461 lncRNA downstream 98501 18151368 ~ 18160034 (+) True G37413
TU50474 lncRNA downstream 139743 18192610 ~ 18217283 (+) True G37424
TU50475 lncRNA downstream 152954 18205821 ~ 18217283 (+) False G37424
XM_015605694.2 mRNA upstream 11892 18029098 ~ 18039806 (+) True LOC103029386
XM_022669243.1 mRNA upstream 126728 17916864 ~ 17924970 (+) True LOC103030008
XM_022669231.1 mRNA upstream 147989 17896790 ~ 17903709 (+) True nif3l1
XM_022669232.1 mRNA upstream 147989 17896892 ~ 17903709 (+) False nif3l1
XM_022669230.1 mRNA upstream 163449 17878595 ~ 17888249 (+) True cabp5
XM_022669246.1 mRNA downstream 11116 18063983 ~ 18099979 (+) True LOC103046566
XM_007248723.3 mRNA downstream 75573 18128440 ~ 18138878 (+) True mapk7
XM_022669250.1 mRNA downstream 118487 18171354 ~ 18185983 (+) True LOC103047175
XM_015605682.2 mRNA downstream 147484 18200351 ~ 18214204 (+) True LOC103030877
XM_022669419.1 mRNA downstream 279607 18332474 ~ 18343461 (+) True LOC103032559
TU50074 other upstream 80699 17961940 ~ 17970999 (+) True G37155
TU50069 other upstream 91394 17952580 ~ 17960304 (+) True G37152
TU50046 other upstream 188632 17857917 ~ 17863066 (+) True G37131
TU50008 other upstream 332322 17718231 ~ 17719376 (+) True G37099
TU50007 other upstream 335706 17715129 ~ 17715992 (+) True G37098
TU50442 other downstream 32049 18084916 ~ 18092911 (+) False LOC103046566
TU50452 other downstream 54697 18107564 ~ 18113926 (+) True G37404
TU50609 other downstream 318511 18371378 ~ 18376345 (+) False G37531
TU50610 other downstream 318511 18371378 ~ 18376345 (+) True G37531
trnag-ccc other downstream 844435 18897302 ~ 18897372 (+) True trnag-ccc

Expression Profile