RNA id: XM_022669419.1


Basic Information

Item Value
RNA id XM_022669419.1
length 2259
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC103032559
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18332474 ~ 18343461 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatcaGTAGAAAGAAGCTGATAGAAAAACTGGGAGGCAGAAAAGGAAGGAAATCAGCAGAACCATCAAacacaaaatactgaaaatctTCAGCATCCTGCAGACTCCGGACAGGCCTGAAACACTGAGtcatgGACGTGGAGAGGATTATCGAGTGCATCAAACAGCATGATCATGAAGGACTGAGGACGCAGCTACAGCAATTTAATAAAGAGtACGCACAGTGTTTTTTCTTCGATGTGGAGGAGTGGGAGAGGAAGAAgAGGCAGGAGCTTGAAgagTTTAAGAGGAATAAAGTCAGAGATCCAGGTTCTGACTCTGATTTGGATGATGAAAGCTCTGAAGACCGAGAAATCTTTCTGAGACAGAGTTTAGCCTCCATTCTGATCCGTTTCCTGCGGTCCGATCCCCACAGCCGAGTGATCCGGGTCTGCTTGCGTACGTTACGGATTCTGTCTCGAGATAAGAAGGTTCTGGACAGCCTGCTCACCGATTCCTCCCTCATCACTCTCGCCAGACTCGCCGGCTTCAGTCAGACCCCCGACCCCGGAGAGGAGCTCGACGACCAGGCGGACCTGTTCGGGGATGTGATGGAAGCTCTCTCAGGCCTGGACTCGAACGATGGTGAGAACGGAGAGGATGAAGAGCCGAGTGCAGAGAATCCAGACGCTAATAACATCAGCGCCTTGAGGCGAAGAAGAAGCAGCGTTTTCAAAGCTCTCATGAGAGGAAAGAGGGACATCAGGGCGAGTGTGGTGGAGGACGAGGACAAAGACGAGGAGGAGGACGGTAAAGGAGCTCAGAAGTGTGAAGAAGAACAAAATAAAGAGGCTGTGAAAATCCTCTGCAATGTTATTTACAACAGCGCCTGGGCCCAAGAGAGAGCAGCCGAGCTCAGtctcctCAGTGGTTTAACTGCAAAGCTGGACAAGGAGTCTCAATCAGCGTCAACACCAAGTGGTCAATATTATGAACTGCGCCTCATATTTCTGCTAACTGCTCTGAGGCCTGAGCTGAGGAACCAGCTTAAGCAGGAGGGAGGGGTTGTGGTGTTGACCACAGTGCTGGAGAGGTGTGTGTCGGTACAGTGGAAGGAACAGTATGAAGTTGCACCTCTGGAACCCGATGCTGCCCTCGTGTCTGTGGAGGACTCGCTGCGAGCACAGGAAGTCCTGAAGATCCTTTTTAACATCACACACAGCGCACACTCCCAGGACCCAGATGAGGAAAATGCTACTCTCTATCGCCGCCTGGCTGCAGTTCTTCGCCACTGTCTGTTGGTGCGCTGTGAGGGAGAGGAGGAGACTGAGGAGCTGAAGGGACACACGGTGAACCTGCTGTCGGCGCTGCCACTGAGCTGCCTGGACGTGCTGCTGTGCGTTCCCCTGCAGCCAGACTCCGAGCAGATGGACGGAGTCAACATGGACTGTGTTCACAGCCTGCTGGTGTACCTGGAGAGGAGACTGGAGAAGGGGGAGAAGGTGAAGGCCAGACTGACCCCTGTGCTGAATCTGCTCACAGAGTGCTCCAGAGCACACAGAGGAACCCGCCGCTACCTCAGACAGCAGATTCTGCCCCCCCTGAGGGATGTGAGTATGAGGCCAGAGGAGGGAAGCACAGTGAAGAGCCGGCTGGTCAGACTGATGACCCACCTGGATACAGAGCTGAAACACTGCGCTGCTGACCTGCTGTTTGTACTCTGCAAGGAAAATGTCAGGCGCTTTGTGAAGTACACCGGCTACGGGAACGCTGCAGGCCTCCTGGCCACGCGGGGCTTGCTGGGAGGTCAGAGGTCGAAGGGCACGTCATCAGGGACGCGGTACTCCAGcgattcagattcagacaccgAAGAGTACCGGCAGGTGAAGAGCCGTATAAACCCGGTGACGGGCAGGTTGGAGGAGGAGCTGCCCGACCCGATGGAGGGAATGActgaggaggagaaagaggaggaggccCGAAGACTCGTCAGCCTGATCAACAAACTGTCCAAGGACAACATGATTCAGCCAATGGGACTGGACGCTCAGGGTCAGCTGACTCCTCTGGCAAGCCTTAGGGACCTCACAGAGGAAGAAGAGGgatcagaggaggaggaggaggagggagcgGACGACTTGTTAAATGTGGAGTAAAGGCGGGATTGGATGAGGATGATTGACAGTAACTGTGTTTTGTAAATCTGTAGTAGTACGAGAATCCGCCATCAGACTGCAGAGTTAAACTACCCTGTCTGAACCTGACTGTGTTTAAATATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50569 lncRNA upstream 14522 18313306 ~ 18317952 (+) True G37501
TU50559 lncRNA upstream 43088 18286903 ~ 18289386 (+) True G37492
TU50541 lncRNA upstream 78702 18243121 ~ 18253772 (+) False LOC111192384
TU50540 lncRNA upstream 85574 18232596 ~ 18246900 (+) True LOC111192384
XR_002649890.1 lncRNA upstream 86302 18232626 ~ 18246172 (+) False LOC111192384
TU50613 lncRNA downstream 42953 18386414 ~ 18386652 (+) True G37534
TU50641 lncRNA downstream 126698 18470159 ~ 18472573 (+) True G37557
TU50683 lncRNA downstream 245761 18589222 ~ 18641095 (+) True G37592
TU50743 lncRNA downstream 302174 18645635 ~ 18707681 (+) False LOC103022762
TU50744 lncRNA downstream 302174 18645635 ~ 18707728 (+) False LOC103022762
XM_015605682.2 mRNA upstream 118270 18200351 ~ 18214204 (+) True LOC103030877
XM_022669250.1 mRNA upstream 146491 18171354 ~ 18185983 (+) True LOC103047175
XM_007248723.3 mRNA upstream 193596 18128440 ~ 18138878 (+) True mapk7
XM_022669246.1 mRNA upstream 232495 18063983 ~ 18099979 (+) True LOC103046566
XM_015605694.2 mRNA upstream 292668 18029098 ~ 18039806 (+) True LOC103029386
XM_007248734.3 mRNA downstream 76732 18420193 ~ 18449203 (+) True LOC103034039
XM_022669443.1 mRNA downstream 175447 18518908 ~ 18529955 (+) True LOC103021514
XM_022669273.1 mRNA downstream 190073 18533534 ~ 18583781 (+) True LOC103021833
XM_022669420.1 mRNA downstream 248444 18591905 ~ 18598830 (+) True cd79b
XM_022669274.1 mRNA downstream 271787 18615248 ~ 18640148 (+) True plekhm1
TU50452 other upstream 218548 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 239563 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 361475 17961940 ~ 17970999 (+) True G37155
TU50069 other upstream 372170 17952580 ~ 17960304 (+) True G37152
TU50046 other upstream 469408 17857917 ~ 17863066 (+) True G37131
TU50609 other downstream 27917 18371378 ~ 18376345 (+) False G37531
TU50610 other downstream 27917 18371378 ~ 18376345 (+) True G37531
trnag-ccc other downstream 553841 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 985907 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 1137595 19481056 ~ 19484915 (+) True G37812

Expression Profile