RNA id: TU50744


Basic Information

Item Value
RNA id TU50744
length 413
lncRNA type sense_over
GC content 0.30
exon number 2
gene id LOC103022762
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18645635 ~ 18707728 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatatatatatatatatatatatatatatatatatatatatatatatATACTACAGCTTAACTGTGAATGGACAGCAGTAGTTTACTTGTACAGGGTCTTTAAAGGCTGAGGATGTTTCTTTAGAGTCGTTTAGCACAAACATCCCAACTTCCCTCTGTAAGATTTATTTGCACATAGACGAAGATTAATCCTGAAGGAAATGAAGAGCATAGATGTAAAGAATTGTAAAGCATTAATATTTTATGAACATAAGGCACATTCATATGCTTAATGTTAAGTGGTTGGAAGATGTATATATAGATAAAGGCATATTTATGCTGTAAATTACCCAGAATAAACAAGCTTTTAATAAAGTTAACTGTTTTACATGTCATGTGTCATTGTCCTACTTTGTCTGCAGTTCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50683 lncRNA upstream 4540 18589222 ~ 18641095 (+) True G37592
TU50641 lncRNA upstream 173062 18470159 ~ 18472573 (+) True G37557
TU50613 lncRNA upstream 258983 18386414 ~ 18386652 (+) True G37534
TU50569 lncRNA upstream 327683 18313306 ~ 18317952 (+) True G37501
TU50559 lncRNA upstream 356249 18286903 ~ 18289386 (+) True G37492
TU50787 lncRNA downstream 105011 18812739 ~ 18812951 (+) True G37652
XR_002649906.1 lncRNA downstream 255509 18963237 ~ 18964036 (+) True LOC111192409
TU50894 lncRNA downstream 506840 19214568 ~ 19214818 (+) True G37735
TU50915 lncRNA downstream 634371 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 766894 19474622 ~ 19476578 (+) True G37767
XM_022669274.1 mRNA upstream 5487 18615248 ~ 18640148 (+) True plekhm1
XM_022669420.1 mRNA upstream 46805 18591905 ~ 18598830 (+) True cd79b
XM_022669273.1 mRNA upstream 61854 18533534 ~ 18583781 (+) True LOC103021833
XM_022669443.1 mRNA upstream 115680 18518908 ~ 18529955 (+) True LOC103021514
XM_007248734.3 mRNA upstream 196432 18420193 ~ 18449203 (+) True LOC103034039
XM_007248736.3 mRNA downstream 1257 18708985 ~ 18716376 (+) True LOC103035226
XM_022669279.1 mRNA downstream 18164 18725892 ~ 18806982 (+) True LOC103023065
XM_022669280.1 mRNA downstream 18164 18725892 ~ 18806982 (+) False LOC103023065
XM_022669281.1 mRNA downstream 54855 18762583 ~ 18806982 (+) False LOC103023065
XM_007248739.3 mRNA downstream 107044 18814772 ~ 18827717 (+) False LOC103035736
TU50609 other upstream 269290 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 269290 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 531709 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 552724 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 674636 17961940 ~ 17970999 (+) True G37155
trnag-ccc other downstream 189574 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 621640 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 773328 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 1450152 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 2311441 21019169 ~ 21030797 (+) True G38079

Expression Profile