RNA id: XM_007248736.3


Basic Information

Item Value
RNA id XM_007248736.3
length 1711
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC103035226
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18708985 ~ 18716376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATCACCCGAGGTGTCCGTATGCGGATGTGGGTCTGAAGCAGAGGCCCGAGGAGCCGCGGGGAGCGTCATGTTGTTACAGCGGGAGAATTAACGTTACCGCAGAACGGAGACAGGACGGTCCGTGACCCGCTGTTTAATCAGCGCGTGAACCCCCCCCTAGGATCAGGGCATCGAGACTGACTCTGGGCCAGACATTGTGACCTGACCAGTCCTAATCCAGGACCTTCAGTTTTTTGAGTTTTCGCTCTGCCCCTGTGGCCTGTGGCCCAGGTTTCAGCACTTTGTCTCAGCAGCGAATCTTTTTGACACTATGGCGGGTCGACCCAACGGGCCGGCCGCAGGGAATAAAATCTGCCAGTTTAAACTGGTTCTGCTTGGAGAATCGGCAGTGGGAAAGTCCAGTCTGGTCCTGCGCTTCGTCAAAGGCCAGTTCCATGAGTACCAGGAGAGCACTATCGGAGCTGCATTCCTCACACAGACAGTATGCCTGGATGACACAACAGTAAAGTTTGAGATTTGGGACACTGCTGGACAGGAGCGATACCACAGTTTGGCCCCCATGTACTACAGAGGAGCACAGGCTGCTATTATAGTCTATGACATAACAAATACaGACACATTCACACGAGCAAAGAACTGGGTGAAGGAGCTGCAGCGGCAAGCCAGTCCAAACATAGTCATCGCTCTGTCCGGGAACAAGGCCGACCTCGCCAACAAGAGAGCAGTTGACtttcagGAGGCTCAAGCTTATGCTGATGACAACAGCCTTTTGTTCATGGAGACATCTGCCAAAACAGCCATGAATGTCAATGAAATTTTCATGGCCATTGCTAAGAAGCTGCCGAAGAACGAGCCTCAGGGTGGTGGAGGAGCGAGCGGCAGGGGAAGGACCGGCGTGGATCTGCAGGACTCCGCCCCCCAGGCCTCCTCCGGCAAGTGCTGTTAAATGTCCACCGCAAAGGGTCCAATATAACAGAACCTTGGAGACAGAACGACCGATTATCAGAAGGAGAGCAATCGCACTTAcgagagattattattattatttctgcagagattgggtttgtttttgtagttttttttgttgttttttttctttgatcaAAAGAGTTTTCTGAAAATCATAAGCTAGAGGGAGTGCCACAgtgcctctctctttcactctgtttctctctctctccccccatGTCTCGATTCTTATCGTTATTTTATGATAATACTAACCTGATTCTGTCTTAAGGCTTATTTTTAAAGATGGAGAGATGAGTACCTAATATGTTGTATGTTTTGGTGATGGGTGCatgtagcatttatttttttcatattatatgttcatattcttgtttttttttttttttgttttgtttttttcatttctggCATTTACTTATCTTCCTTATCAGCGGAGACGGAGCCGTGGGGAGGGCAACAAAGAATCATACACTTCcaaatttgtctgtttttgtaaatgaactagtattgtttttattacagcAGCTCCACCTTAGATATATCATGGCATTACTGGGGTTGAATAACACATGCGTACGGggctgtgtgtgtctctgatCAATGTGTAATATGATAACTCCAATGAAGTGCAAAGTCAGCATTACCACTTAAACCAGAAAACATTTTTAGCATCATGTTTTTCAATCTGTAAGATATTATGGTGATacaagaataaaacaataaagtgGGAAAGATTTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50744 lncRNA upstream 1257 18645635 ~ 18707728 (+) False LOC103022762
TU50743 lncRNA upstream 1304 18645635 ~ 18707681 (+) False LOC103022762
TU50683 lncRNA upstream 67890 18589222 ~ 18641095 (+) True G37592
TU50641 lncRNA upstream 236412 18470159 ~ 18472573 (+) True G37557
TU50613 lncRNA upstream 322333 18386414 ~ 18386652 (+) True G37534
TU50787 lncRNA downstream 96363 18812739 ~ 18812951 (+) True G37652
XR_002649906.1 lncRNA downstream 246861 18963237 ~ 18964036 (+) True LOC111192409
TU50894 lncRNA downstream 498192 19214568 ~ 19214818 (+) True G37735
TU50915 lncRNA downstream 625723 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 758246 19474622 ~ 19476578 (+) True G37767
XM_022669276.1 mRNA upstream 1297 18647469 ~ 18707688 (+) True LOC103022762
XM_022669275.1 mRNA upstream 1297 18647469 ~ 18707688 (+) False LOC103022762
XM_022669278.1 mRNA upstream 1297 18647469 ~ 18707688 (+) False LOC103022762
XM_022669277.1 mRNA upstream 1297 18647469 ~ 18707688 (+) False LOC103022762
XM_022669274.1 mRNA upstream 68837 18615248 ~ 18640148 (+) True plekhm1
XM_022669279.1 mRNA downstream 9516 18725892 ~ 18806982 (+) True LOC103023065
XM_022669280.1 mRNA downstream 9516 18725892 ~ 18806982 (+) False LOC103023065
XM_022669281.1 mRNA downstream 46207 18762583 ~ 18806982 (+) False LOC103023065
XM_007248739.3 mRNA downstream 98396 18814772 ~ 18827717 (+) False LOC103035736
XM_022669282.1 mRNA downstream 101476 18817852 ~ 18827717 (+) True LOC103035736
TU50609 other upstream 332640 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 332640 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 595059 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 616074 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 737986 17961940 ~ 17970999 (+) True G37155
trnag-ccc other downstream 180926 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 612992 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 764680 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 1441504 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 2302793 21019169 ~ 21030797 (+) True G38079

Expression Profile