RNA id: XM_022669420.1


Basic Information

Item Value
RNA id XM_022669420.1
length 1220
RNA type mRNA
GC content 0.44
exon number 5
gene id cd79b
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18591905 ~ 18598830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTATCACTGCTGAGTGATCTCCACCCGGCTCTTACGATCGAGTGAGGACCACAAGCTTCTCTCCGGCTCTGTAGGTAACATCTGATACCTGCTCTGAAACGTCTGAACGTCCAGTTCTCCTGGATAAACGTCTGACAGCATGCGTTACTCCATAGCAGGCTGTGTTCTGATGCTGCTGATGAAGCTCTCAGCATCGATGGCAGCTATTCAGATTCAGCAAAATCCCAGGTTTTACTGTGTCAGAATGGGGCGGACTGTGTCCATCTACTGTATGATATCAGGAGCGAGCTCAGAGTCTCTGAAGGTAAAGTGGTATAAAGCCAAAACACACAGCGACCCAAAGCGTGAGAGACACGTCACACCTGAGAACTCTGTGAAAATAAACATCACCAATGTGAAGCTGGAGGACAACGGGGTTTACTACTGCGAAGTGAACGGCAATATGGGACATGGAACTGAGCTGCAAGTGTTGAGACTCAGCAAATCTAAAGAAGCTGCACGGAGAAGCAAAATGAAAGATTTCATCATTTTCCTGCAGGCTTTTCTTCTGGTGCTGTGTATAGTTCTTCCCCTGCTGTGGCATTACAGACTGGGGAAGAAGGAGGAGGCTGTGTATGAAGAGCCAGAACGTGATCACACGTACGAGgGTCTGGAGATTGAACACTGTGGTGGAGATCTGTATGAAGATATTCGTGCTTTTGCGGATGTGTCTCAAGGTCCAGAGGCAGCATGGGAAGTTGAAGCTGTTGAAGGCGACGCCCCTGAAATAGAGTTTCCAGAAGAGTAGTACTGTAGTCTTGgacaaaaaacagtcaaaaaagtgataaaacaTACATCATTTCTACCTAAAAAACAACGCGTTTTCtttgtaaaagtaatttaactGGCTGAAAGTACTAGTCCTGTGCTAGGTTATTGTGTAAAATTGGTAAAAGTACATTTGGATCACATTATTTTAATGCATCAGTGTGGAAGGTGTGAAGCAGTCCACCTTAAAGTTCAACTTAAAATCCACAGGAGACTGCAAAAGAACCTTTTTGAGCCCTTTAATGCTAAAGGTCCATCCACATCTTAGCAGGTACTGGATAatttgtagtagatactgaattacTGGTCTATAAGTAGCTTGTTAAACCCTATcaggatgggattagtttctcttttatggaggatcctctgtgattttattcccatctggaACAATCATGtactgtacat

Function

GO: NA

KEGG:

id description
K06507 CD79B, IGB; CD79B antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50641 lncRNA upstream 119332 18470159 ~ 18472573 (+) True G37557
TU50613 lncRNA upstream 205253 18386414 ~ 18386652 (+) True G37534
TU50569 lncRNA upstream 273953 18313306 ~ 18317952 (+) True G37501
TU50559 lncRNA upstream 302519 18286903 ~ 18289386 (+) True G37492
TU50541 lncRNA upstream 338133 18243121 ~ 18253772 (+) False LOC111192384
TU50743 lncRNA downstream 46805 18645635 ~ 18707681 (+) False LOC103022762
TU50744 lncRNA downstream 46805 18645635 ~ 18707728 (+) False LOC103022762
TU50787 lncRNA downstream 213909 18812739 ~ 18812951 (+) True G37652
XR_002649906.1 lncRNA downstream 364407 18963237 ~ 18964036 (+) True LOC111192409
TU50894 lncRNA downstream 615738 19214568 ~ 19214818 (+) True G37735
XM_022669273.1 mRNA upstream 8124 18533534 ~ 18583781 (+) True LOC103021833
XM_022669443.1 mRNA upstream 61950 18518908 ~ 18529955 (+) True LOC103021514
XM_007248734.3 mRNA upstream 142702 18420193 ~ 18449203 (+) True LOC103034039
XM_022669419.1 mRNA upstream 248444 18332474 ~ 18343461 (+) True LOC103032559
XM_015605682.2 mRNA upstream 377701 18200351 ~ 18214204 (+) True LOC103030877
XM_022669274.1 mRNA downstream 16418 18615248 ~ 18640148 (+) True plekhm1
XM_022669276.1 mRNA downstream 48639 18647469 ~ 18707688 (+) True LOC103022762
XM_022669275.1 mRNA downstream 48639 18647469 ~ 18707688 (+) False LOC103022762
XM_022669278.1 mRNA downstream 48639 18647469 ~ 18707688 (+) False LOC103022762
XM_022669277.1 mRNA downstream 48639 18647469 ~ 18707688 (+) False LOC103022762
TU50609 other upstream 215560 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 215560 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 477979 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 498994 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 620906 17961940 ~ 17970999 (+) True G37155
trnag-ccc other downstream 298472 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 730538 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 882226 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 1559050 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 2420339 21019169 ~ 21030797 (+) True G38079

Expression Profile