G52909


Basic Information

Item Value
gene id G52909
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4323635 ~ 4323881 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60262
AGACCCCGGAGTGGAGCCAACATCAAGGTTATAAAACCTGATAAATGTGTGCTGGCATGACCATCCAGCTGCATCACAGATATCATTAATGGAAATACCAGACATCAGAGCCTTTGATGCCGCCATACCCCTGGTAGAGTGGGCGCGGACATTCAATGGAGAAGGCTGTCCGGCCGCTTCATATGCAAGTGAGATGGCCTCGACCACCCACTTGCTCATCCTCTGCTTAGATGCTGGGCCCCCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60262 True 247 lncRNA 0.52 1 4323635 4323881

Neighbor

gene id symbol gene type direction distance location
CI01000009_04261520_04263271 NA coding upstream 60210 4261116 ~ 4263425 (+)
CI01000009_04218049_04229604 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 93845 4218049 ~ 4229790 (+)
CI01000009_04199761_04203673 MAB21L3 coding upstream 119740 4199379 ~ 4203895 (+)
CI01000009_04193380_04194878 NA coding upstream 128733 4193380 ~ 4194902 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding upstream 130665 4188141 ~ 4192970 (+)
CI01000009_04435947_04448679 NA coding downstream 110818 4434699 ~ 4448727 (+)
CI01000009_04462240_04659526 LRP1BA, LRP1B coding downstream 138359 4462240 ~ 4660735 (+)
CI01000009_04758013_04761749 NA coding downstream 432470 4756351 ~ 4761839 (+)
CI01000009_04763889_04769573 INHBB coding downstream 439439 4763320 ~ 4769829 (+)
CI01000009_04866883_04867968 NA coding downstream 542870 4866751 ~ 4873730 (+)
G52908 NA non-coding upstream 1861 4321448 ~ 4321774 (+)
G52905 NA non-coding upstream 6662 4316743 ~ 4316973 (+)
G52877 NA non-coding upstream 41826 4281362 ~ 4281809 (+)
G52795 NA non-coding upstream 169983 4153434 ~ 4153652 (+)
G52772 NA non-coding upstream 260066 4063348 ~ 4063569 (+)
G52911 NA non-coding downstream 11957 4335838 ~ 4339744 (+)
G52913 NA non-coding downstream 26736 4350617 ~ 4351298 (+)
G52887 NA non-coding downstream 61837 4385718 ~ 4389755 (+)
G52931 NA non-coding downstream 360960 4684841 ~ 4685130 (+)
G52935 NA non-coding downstream 367989 4691870 ~ 4692324 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 1114651 3202207 ~ 3208984 (+)
G51529 NA other upstream 1261048 3062033 ~ 3062587 (+)
G51274 NA other upstream 1973149 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 2422209 1897343 ~ 1919516 (+)
G51122 NA other upstream 2641669 1680146 ~ 1681966 (+)
G53388 NA other downstream 1198361 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 1536421 5931718 ~ 5943899 (+)
G53651 NA other downstream 1921683 6245564 ~ 6248392 (+)
G56100 NA other downstream 4805419 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 5529478 9853929 ~ 9856587 (+)

Expression


Co-expression Network