G52877


Basic Information

Item Value
gene id G52877
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4281362 ~ 4281809 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60222
CTTTGCCTACCCAATTTCTTCCTTCCAGTCAACTTTGCATTTAATATGCTTTGATACATCACTCTGTAAACAGCCACCCCATTCAGTAATGACCTTCTGTGACTTACTCTCTTTGTGGAGGGTGTCAATGATTGTCTCCTGGACCATTGCCAAGTCAGCAGTCTTCCCCATTAGTGTGGTTTCAAAGAACAAGAGATACCCGGAATTTATACTGTAGGGATGGTCATTTAATGAAACTCAAATGTAAATATTCTAATATTTTGAGATACTGAATTTTGGACTTTCATTAGCTGTACGCTCTAATCAACAAATTAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTTAAAATAATTTACAATAAAAAAATGAACTTTTTCACTATATTCTAATTATATGACCAGCACCTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU60222 True 448 lncRNA 0.33 1 4281362 4281809

Neighbor

gene id symbol gene type direction distance location
CI01000009_04261520_04263271 NA coding upstream 17937 4261116 ~ 4263425 (+)
CI01000009_04218049_04229604 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 51572 4218049 ~ 4229790 (+)
CI01000009_04199761_04203673 MAB21L3 coding upstream 77467 4199379 ~ 4203895 (+)
CI01000009_04193380_04194878 NA coding upstream 86460 4193380 ~ 4194902 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding upstream 88392 4188141 ~ 4192970 (+)
CI01000009_04435947_04448679 NA coding downstream 152890 4434699 ~ 4448727 (+)
CI01000009_04462240_04659526 LRP1BA, LRP1B coding downstream 180431 4462240 ~ 4660735 (+)
CI01000009_04758013_04761749 NA coding downstream 474542 4756351 ~ 4761839 (+)
CI01000009_04763889_04769573 INHBB coding downstream 481511 4763320 ~ 4769829 (+)
CI01000009_04866883_04867968 NA coding downstream 584942 4866751 ~ 4873730 (+)
G52795 NA non-coding upstream 127710 4153434 ~ 4153652 (+)
G52772 NA non-coding upstream 217793 4063348 ~ 4063569 (+)
G51857 NA non-coding upstream 233035 4047828 ~ 4048327 (+)
G51853 NA non-coding upstream 247539 4033600 ~ 4033823 (+)
G51840 NA non-coding upstream 290724 3989626 ~ 3990638 (+)
G52905 NA non-coding downstream 34934 4316743 ~ 4316973 (+)
G52908 NA non-coding downstream 39639 4321448 ~ 4321774 (+)
G52909 NA non-coding downstream 41826 4323635 ~ 4323881 (+)
G52911 NA non-coding downstream 54029 4335838 ~ 4339744 (+)
G52913 NA non-coding downstream 68808 4350617 ~ 4351298 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 1072378 3202207 ~ 3208984 (+)
G51529 NA other upstream 1218775 3062033 ~ 3062587 (+)
G51274 NA other upstream 1930876 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 2379936 1897343 ~ 1919516 (+)
G51122 NA other upstream 2599396 1680146 ~ 1681966 (+)
G53388 NA other downstream 1240433 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 1578493 5931718 ~ 5943899 (+)
G53651 NA other downstream 1963755 6245564 ~ 6248392 (+)
G56100 NA other downstream 4847491 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 5571550 9853929 ~ 9856587 (+)

Expression


Co-expression Network