G51857


Basic Information

Item Value
gene id G51857
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4047828 ~ 4048327 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59074
CCGATGTTGATTTAATCCATAATACAAATGCCATGGCAGTCCTTAACATATGACTAATCAACATTATATCACTAGCATTAATGTTGTTATTGTTACAGCTTAACAGACTGCAGCTGACCTTTGCTAGCTAGCTAACCTATTACAATAATGTCATTCCATTGTTGCACAGTGTTGCCATATGGCAACACAGACATTTTATCGATTTACCAAAAACTATTTTCATAAAAACTTTTTTGAGTGGTGAATATGTCATCATAACTTACCTGAGATGATGTTACCAATTTTTTTGTGAATGTGACATGGGCGGGTCCTTGTTTGTTACTGATGTTTTAGTTTGCTTTCAGCAACTACCGACAAGAGACGGCAGTCTGTCAGAAATCGCGCCACAGAAAAAAATTGCATGTCATGTGACTTAACCAAAGCACATCATTGGCTAAACTAAGGTCTTCTCTTACCAACAAAAAAAACGAGAATGTTCTCTTCAAGAGACAGTGGCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59074 True 500 lncRNA 0.49 1 4047828 4048327

Neighbor

gene id symbol gene type direction distance location
CI01000009_03965885_03980591 NA coding upstream 66679 3965656 ~ 3981149 (+)
CI01000009_03760934_03761223 NA coding upstream 285989 3760934 ~ 3761839 (+)
CI01000009_03724620_03726787 NA coding upstream 320439 3723410 ~ 3727389 (+)
CI01000009_03689901_03697052 GABPA coding upstream 350358 3689330 ~ 3697470 (+)
CI01000009_03680266_03685634 NA coding upstream 362173 3680266 ~ 3685655 (+)
CI01000009_04168077_04171609 NA coding downstream 119750 4168077 ~ 4171609 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding downstream 139814 4188141 ~ 4192970 (+)
CI01000009_04193380_04194878 NA coding downstream 145053 4193380 ~ 4194902 (+)
CI01000009_04199761_04203673 MAB21L3 coding downstream 151052 4199379 ~ 4203895 (+)
CI01000009_04218049_04229604 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding downstream 169722 4218049 ~ 4229790 (+)
G51853 NA non-coding upstream 14005 4033600 ~ 4033823 (+)
G51840 NA non-coding upstream 57190 3989626 ~ 3990638 (+)
G51792 NA non-coding upstream 177342 3868800 ~ 3870486 (+)
G51761 NA non-coding upstream 251838 3790691 ~ 3795990 (+)
G51769 NA non-coding upstream 259758 3787837 ~ 3788070 (+)
G52772 NA non-coding downstream 15021 4063348 ~ 4063569 (+)
G52795 NA non-coding downstream 105107 4153434 ~ 4153652 (+)
G52877 NA non-coding downstream 233035 4281362 ~ 4281809 (+)
G52905 NA non-coding downstream 268416 4316743 ~ 4316973 (+)
G52908 NA non-coding downstream 273121 4321448 ~ 4321774 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 838844 3202207 ~ 3208984 (+)
G51529 NA other upstream 985241 3062033 ~ 3062587 (+)
G51274 NA other upstream 1697342 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 2146402 1897343 ~ 1919516 (+)
G51122 NA other upstream 2365862 1680146 ~ 1681966 (+)
G53388 NA other downstream 1473915 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 1811975 5931718 ~ 5943899 (+)
G53651 NA other downstream 2197237 6245564 ~ 6248392 (+)
G56100 NA other downstream 5080973 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 5805032 9853929 ~ 9856587 (+)

Expression


Co-expression Network