CI01000009_03680266_03685634


Basic Information

Item Value
gene id CI01000009_03680266_03685634
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3680266 ~ 3685655 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03680266_03685634.mRNA
TGTGTGTGGAGGTTATCAGGCCTGGTTTGGACTGCCATCCCCCACTATCCAGAACATCCATCCGTCACGTAAATTCCTACACATCCCTGTTCCTGGCACCACCAGAGTGGGGAGTGAGTGTTATTCCTAGCTCAGATCCTGTCACTGTCACTACAAGTAAAGCAAAAGTGGAGGTACATGAAAACACAAGTAAGTTACTTAGTCTTCAGATAATCAGCTGGACATGCTTAAAAGCTTTCAGACTGACACTTTATCTGTTCTTTGCAAAAGATGCTGTCCTTTCCTGTGAGTTCAGGACAGAGAAAGAAACGAACCCACGTGTTGAATGGAAGAAGAGAGGCAAAGATGTTTCATATGTTTATTTTGATGGCGAATTTACAGGTTCATTTAAGGGTCGTGCTTCCATCGAAGGGGCGACAATGACCCTCCGTGGTGTTACACAGAAAGACTCAGGAGTGTATCATTGCGAAGTCACAGCCCGCCAAGACAAAATCAAGCTGGGGGAGGTCACCGTCACCCTCAATGTGCTTGTGCCGCCACATGCGCCATCATGTGAGGTCCCTGAAACAGTCATGAAAGGATTTTCTGCGGAGCTCCACTGTAAAGACAAACTGAGCATTCCTGCTGCCACCTACAGCTGGTACAAAGACAACAAACCACTTTACACTGGCAATCATCAGGAAATCCACTACACCCTGGACCCCAAAACAGGGACTCTGAAATTCAAGGCGGTATCAAAATCTGATGAGGGTCAGTATCGATGTGAGGCCTCCAATGGAGTGGGGGCACCTAAAAGCTGTGCAGGCCAGCATATGAAGATAACTGAATACGAGGGTGCTGTCGATGCTGCCGCACAGAACAAAGACCAGCTACAACCCTCCAACAGATCCGAGACACTACAAACATACACAATCCTTTGTGCTTTGAAGAGTGTGCACATTTTGGACAGCACCATGCTGACAGAAGTAAACTAAAGTGACCTCAAAGGCTAGAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03680266_03685634.mRNA True 995 mRNA 0.47 8 3680266 3685655

Neighbor

gene id symbol gene type direction distance location
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding upstream 18909 3650884 ~ 3661357 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 206852 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 324840 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 346813 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 350756 3313112 ~ 3329510 (+)
CI01000009_03689901_03697052 GABPA coding downstream 3675 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 37755 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 75279 3760934 ~ 3761839 (+)
CI01000009_03965885_03980591 NA coding downstream 280001 3965656 ~ 3981149 (+)
CI01000009_04168077_04171609 NA coding downstream 482422 4168077 ~ 4171609 (+)
G51678 NA non-coding upstream 4194 3668710 ~ 3676072 (+)
G51685 NA non-coding upstream 34654 3645364 ~ 3645612 (+)
G51700 NA non-coding upstream 35364 3644203 ~ 3644902 (+)
G51688 NA non-coding upstream 36657 3643301 ~ 3643609 (+)
G51676 NA non-coding upstream 37156 3641220 ~ 3643110 (+)
G51699 NA non-coding downstream 362 3686017 ~ 3686378 (+)
G51694 NA non-coding downstream 823 3686478 ~ 3699404 (+)
G51751 NA non-coding downstream 57309 3742964 ~ 3743261 (+)
G51752 NA non-coding downstream 57645 3743300 ~ 3743562 (+)
G51755 NA non-coding downstream 63969 3749624 ~ 3749945 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 471282 3202207 ~ 3208984 (+)
G51529 NA other upstream 617679 3062033 ~ 3062587 (+)
G51274 NA other upstream 1329780 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1778840 1897343 ~ 1919516 (+)
G51122 NA other upstream 1998300 1680146 ~ 1681966 (+)
G53388 NA other downstream 1836587 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2174647 5931718 ~ 5943899 (+)
G53651 NA other downstream 2559909 6245564 ~ 6248392 (+)
G56100 NA other downstream 5443645 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6167704 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location