CI01000009_03689901_03697052 (GABPA)


Basic Information

Item Value
gene id CI01000009_03689901_03697052
gene name GABPA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3689330 ~ 3697470 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03689901_03697052.mRNA
CTACAAAAGCCTCGGTGTTGCGTGAGAGTTTATGAGACTTCTGAGTGCGTCAACCTGACGATTTATTGCCTTTGGGACACATTTAGATGTTTTATATAACTTAACTGTTCTTTAAAATGCTAAAAATAATGTAAAATAAACGCTTCCTACTTTTATTTATAAGGTTATAAGTATAAGTTAATTTGGTAACACTTTACAAAAAGATTTTATTTGTTACCGTTAGTTACCATAAATTAACAATGAACAAAACTTCTACAGCATTTATTAATCTTAGTTCATGTTAATGTTCAACGTTTGCTAATACACCTGTTAACTAACATTAACAAAAAAAGGACCAATTATATTTTTAACTACTTCAGCTTTAACAAAGACTAATAAATGCTGTAAAAATAAAATGTTTGTTGTTAGTTCATGTTAGATAATGCATTAAGTAATGTTAACAAATGAGGCCTTATTTTAAAGTGTTACTGATAATTGTACACTTTATTGTGATTAAATTAATTGCAAAAAATATTTTGTCCTTTTTCTTTAAATTTTCGTTCACTACATAGTTGGACAAAGAGTTGTAGGGATGTCAAAAAGTGAGACAGAGGAGATGATTGAAATTGAGATTGATGGACGGGAGAAACAGGAGTGTCTAGAGGAAGGGATTGAGGAGCAAACCATCACAGCAGCTGAACTAATCACTCAAGACATTGACATCAATGAGCCGATCGGTAACCTGAAGAAATTGCTGGAGCCTCGTCTTCAGATCCCGCTGGATGGATATGACATTTGTCTGCAGGACATCCTACTGCATCCTGATCACAGCCTGTTCGATCAAGGAGTGAAGACAGATGGCACAGTACAGCTCAGTGTGCAGATTGTCACGAAACAGGGTGAAGAGAAATTGAATATTCTGGAGATTGTGAAACCAGTGGAGACTGTGGAGGTGGTGATTGATCCAGATGCAGCTGCTGGCGAGGAAGCCCATCTGGTGGAGGACGGACATGTGATTGCAGTGGAGCGAGCAGCCATTCCTGATGAGACTTCAGAGCAGGTTACGCGCTGGGCAGCCGCATTGGAAGGCTACCGCAAGGAGCAGGTTCGACTGAACATTCCTTATGACCCTGTACAGTGGACAGCAGATCAGGTGATCCACTGGGCAGTTTGGGTTATGAAGGAGTTCGGCATTGAGGAAATGGAGGTGGGTGGCATTCACATCCCTGGCCGCCAACTCTGTGCTTTCAGCCAGGAGGAGTTCCTCCAAAGAGTGCCCAGCGGAGAGATCCTGTGGAGCCACCTGGAGCTTCTACGCAAGTATGTTCTTGCGAGTCAGGATCAGGGTCAGGAAGCAACAGTCACCATTGATCAACCTGTGCAGATCATTCCTGCCCCCGTGCAGCAGGCCACACCCACAGCCATTAAGGTGATGAAGCACAACAAAACACCCCGAGCCCCCCGGATCTCAGGAGAGGAGCGCAGCTCCCCTGGCAACCGCACAGGTAATAATGGTCAGATTCAGCTGTGGCAGTTTCTCCTGGAGCTGCTGACGGATAAGGACTCCCGGGACTGCATTTCCTGGGTGGGAGAGGAAGGAGAGTTCAAACTCAATCAGCCTGAGCTGGTAGCTCAGAAATGGGGCCAGCGCAAAAACAAGCCCACCATGAACTATGAGAAACTAAGCAGAGCTCTCAGGTACTACTATGATGGAGACATGATCAGCAAAGTGCAGGGTAAGCGCTTCGTCTACAAGTTTGTGTGCGACCTGAGGACTCTGATTGGATACAGCGCTGCAGAGCTTAACAACCTGGTGACGGAGTGTGAACAGAAGAAACTCGCCCGGGTGCAGCTGCACGGTCTCGGCCAGCCCGTCAACACAGTCACGCTGGCCACCGCCACAGGGCAGCCTGTCACCACCGTCACTCTGGCTGCAGCAGCTTTAGAGAAAGACAGTTGAGGAGGGAGTGGCTTGCTACTCCCAGCCAATCAGGAGACAAGTCTAAGATGGGAGGAAACCGGGTTAAAAACATTTGACTTTGGGCAGGGAGGGAGACAGCGGGTTTGTAAGCAGATGTGCGCTTTGTTACGAGTGTGTATGTATGTTTGCGTGTCCTTAAAATGCTTAGAGAGCGAATGTGTGTGTTTGTGTGAGAGATAAGAACAGATGATCATGTATGAGCTTTCAGTTTTTGTATGCTTGTTCTCTGACTGCAGGGTAGCATCGGCTATATTTCCATTGTATATACTCTATGTTTTTGATAGCCATGTGGGCAGTGTATTTTGATATTTTCCATTTGTAAAGGATCTTTTCTTTTTTATTTTTAAGTGTCCAATTCCCTCAAGGTGAGGTACTTTTTACTGTCCACCAGAGGGCA

Function

symbol description
gabpa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human GABPA (GA binding protein transcription factor subunit alpha).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09441 GABPA; GA-binding protein transcription factor, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03689901_03697052.mRNA True 2357 mRNA 0.45 9 3689330 3697470

Neighbor

gene id symbol gene type direction distance location
CI01000009_03680266_03685634 NA coding upstream 3675 3680266 ~ 3685655 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding upstream 27973 3650884 ~ 3661357 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 215916 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 333904 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 355877 3330585 ~ 3333453 (+)
CI01000009_03724620_03726787 NA coding downstream 25940 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 63464 3760934 ~ 3761839 (+)
CI01000009_03965885_03980591 NA coding downstream 268186 3965656 ~ 3981149 (+)
CI01000009_04168077_04171609 NA coding downstream 470607 4168077 ~ 4171609 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding downstream 490671 4188141 ~ 4192970 (+)
G51699 NA non-coding upstream 2952 3686017 ~ 3686378 (+)
G51678 NA non-coding upstream 13258 3668710 ~ 3676072 (+)
G51685 NA non-coding upstream 43718 3645364 ~ 3645612 (+)
G51700 NA non-coding upstream 44428 3644203 ~ 3644902 (+)
G51688 NA non-coding upstream 45721 3643301 ~ 3643609 (+)
G51751 NA non-coding downstream 45494 3742964 ~ 3743261 (+)
G51752 NA non-coding downstream 45830 3743300 ~ 3743562 (+)
G51755 NA non-coding downstream 52154 3749624 ~ 3749945 (+)
G51764 NA non-coding downstream 70925 3768395 ~ 3768677 (+)
G51765 NA non-coding downstream 75281 3772751 ~ 3773011 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 480346 3202207 ~ 3208984 (+)
G51529 NA other upstream 626743 3062033 ~ 3062587 (+)
G51274 NA other upstream 1338844 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1787904 1897343 ~ 1919516 (+)
G51122 NA other upstream 2007364 1680146 ~ 1681966 (+)
G53388 NA other downstream 1824772 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2162832 5931718 ~ 5943899 (+)
G53651 NA other downstream 2548094 6245564 ~ 6248392 (+)
G56100 NA other downstream 5431830 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6155889 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location