CI01000009_03965885_03980591


Basic Information

Item Value
gene id CI01000009_03965885_03980591
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3965656 ~ 3981149 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03965885_03980591.mRNA
GCATAAAATACATACATGCAAACATATCCCATGTTTACGCATGTTTTGAAATAACAGGGAACGTGCCAAAAAATTTCTCCCTAATGCACTTGGTTGAGATTAATTAATATCTAGGCTGTAATCCAATCACAACAAACTCATGTAGATGGATGCACACTTGAGTATGGCACACACAAACACACTGTACATACACACACCAAGACGTTAAGTCGGTGTTAAGGTAAAACAGATGGAACAGAAAGATTACGCATACACACAGAGGAAAAGCTGGTGTGTGACTGTGCATACCTCTGCAGCATTAACATACTGGCAGCAGTTAATTCACAACCAGATTGTAGCTGGTTTTAGAAGTCAGAGAGTGGCTGGCAGTGGCATAATGCTCCACCATGAGAAGCATAAGAAAGCTCTTACTGGCAGCAAGAGAGGACTGACCATAAGAAGTCCTCTAAGTCCTCCATCCAGTTCAGACCTGGGCAATAGTGAAGAGGAGGCCATAAAAAAGCCACTTAGCCCCTGTAATGGGCAATCTTTGGGGATAAAAGTCTCTTGTGCCAGGATTAAAGCGAGGATAAGTGTCCCACTAAGCTCAGCTAGATCCTCAACAGAATCCTTACGAGCCCAGATAAGTTCCAGCCAGATTGGATTCTATATCTGGAGCTTTGTGATCAAATATGAGTCCCTGTCAGCATTCAGTTTTTGTTTCCTTACTTCACAAACTGCCGCCTTGTCTTTTTTACCCATAACTCGTCCTGGCCTCTTATCCTCTTCTGCTGGCGATTATGATGAAGGGCTTCAGAGGGAATTGTCGATTTGGTCTTTCATCAGGGTCAGCCTGACCATCCGTCACACCCTCCATTCTCCGCACATAGAGGGTCTGGCAGCGGTCGAGTTTAGTGCAGAATGGCTGGAGTGCTGTAAATCTGTTGCAGATGGGAATGGGGGACTTGAGCAGAGTTCATATGCCCATAATGCTCCTGAGGGCTCATGGGAGCATGGACAATTCTATGAGCGACAATACCTCTTCACATCTGTGCTAGGAAATAACTGACTAAAAGTAATCACACTATAAAGAATAAGTTAATTCTTTACTAGTGTAAAAGTCTACTTAAAAAAAAAAAAAAAAAAAAAAAAATGAAAAGTGAATATATATATATATGTATATATTAAGTATAAATAACTGTTTTCTGTTTTAAAATATTATAAAATGTAATTTATTTTTTCAGTGGCCATTAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTTTAATATGCTGATTTGGTGCTCAAGATACATTAGTTATTATCAATGTTGAAAACAGCTGTTCTGCTTAATATTTTTGTGGAACCAAGATACTCTTTTTCAGAATTTATTTGAAATATTAAATTGATCAAAAGTGACAGTAAAGACTTTTACATTGTTATAAAAATGTATGTGTCCTTGCTGAATAAAAAGTATTAACTTCTTTAAAAAAAGAAAAAAAAAAAAGGCCCCAACTTTTGAATGGATATTGCGCCCACAGATTTAAAGCAGAGCAAGCTGAGGCAATAATAACACATGCGCTGATTCATTTTTGTGAATCAGTTCATTCACATGGTCATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03965885_03980591.mRNA True 1606 mRNA 0.38 5 3965656 3981149

Neighbor

gene id symbol gene type direction distance location
CI01000009_03760934_03761223 NA coding upstream 203817 3760934 ~ 3761839 (+)
CI01000009_03724620_03726787 NA coding upstream 238267 3723410 ~ 3727389 (+)
CI01000009_03689901_03697052 GABPA coding upstream 268186 3689330 ~ 3697470 (+)
CI01000009_03680266_03685634 NA coding upstream 280001 3680266 ~ 3685655 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding upstream 304299 3650884 ~ 3661357 (+)
CI01000009_04168077_04171609 NA coding downstream 186928 4168077 ~ 4171609 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding downstream 206992 4188141 ~ 4192970 (+)
CI01000009_04193380_04194878 NA coding downstream 212231 4193380 ~ 4194902 (+)
CI01000009_04199761_04203673 MAB21L3 coding downstream 218230 4199379 ~ 4203895 (+)
CI01000009_04218049_04229604 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding downstream 236900 4218049 ~ 4229790 (+)
G51792 NA non-coding upstream 95170 3868800 ~ 3870486 (+)
G51761 NA non-coding upstream 169666 3790691 ~ 3795990 (+)
G51769 NA non-coding upstream 177586 3787837 ~ 3788070 (+)
G51768 NA non-coding upstream 186777 3778606 ~ 3778879 (+)
G51766 NA non-coding upstream 191765 3773653 ~ 3773891 (+)
G51840 NA non-coding downstream 8477 3989626 ~ 3990638 (+)
G51853 NA non-coding downstream 52451 4033600 ~ 4033823 (+)
G51857 NA non-coding downstream 66679 4047828 ~ 4048327 (+)
G52772 NA non-coding downstream 82199 4063348 ~ 4063569 (+)
G52795 NA non-coding downstream 172285 4153434 ~ 4153652 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 756672 3202207 ~ 3208984 (+)
G51529 NA other upstream 903069 3062033 ~ 3062587 (+)
G51274 NA other upstream 1615170 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 2064230 1897343 ~ 1919516 (+)
G51122 NA other upstream 2283690 1680146 ~ 1681966 (+)
G53388 NA other downstream 1541093 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 1879153 5931718 ~ 5943899 (+)
G53651 NA other downstream 2264415 6245564 ~ 6248392 (+)
G56100 NA other downstream 5148151 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 5872210 9853929 ~ 9856587 (+)

Expression


Co-expression Network