CI01000009_03724620_03726787


Basic Information

Item Value
gene id CI01000009_03724620_03726787
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3723410 ~ 3727389 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03724620_03726787.mRNA
CTTTATAAGCCCATTTATTACAAATTTAATAAAAACAGTCTTCTTTTCACAGAAATTGGGTTTCCTTCATCAGTATTAAATATATATTTGAACTTCATACACTTTTGGACCATAAAAAATACACAAAGTCATTGAATCTTAAAGGCACATACTTTAGATTAATAATAGCATATTCTTCTCAGACACGTTTCAATAAACAGCAGGCACAAGTTGTGACAAGGTTCTTCAATATAGTATGACAAAGGGTCAATGAACTTTATTTCCTGAGCAATAACAGTAGTAAAGCCAACAGAAAACGAATAAGGCGCAAAAAGGGAATTTAAAGCCCTCTAGCGCCATCTTATGGAATTTACAGAACAATGCGTTGGACATCTTGTTCACCTTGTCCGGTCTGGGTTTTTTCCCACCTAAAATCGCGGCTCAAAAACAAACCAGACAGTCATGTGCACATCCAGGTGCAATCACCTACCCATAAAAATTCTAGGTCACATTCAGGTAACTCGCTACAGGCTACTTTTAAACAATGAACTTAGCCACGCCCAGAAGCATTGGAATTCATGAGTGGGATGTGTAGGCGCGTCTTAAAACTGACACTAAATACACGAATGATTCATTCATTTTACTTCACTCACAGCAATCGGATTCGTGCGTGTCTTCTGCAGCGGAAATATAACCCAAAGGTCAGCAGGATACTGTGCCTTTAATTTTAATCTGTTGTTTGTTGTCATATATATATATATATAATTTGATATATTGTTTTTAAACAATGTCATATATAGTTTATTTGATATATTATTTTTAAACAGTTTCATGCAGTTAAAAGTTTTATTGATCCACAACTTAGGCGTGAGAGACGCGTTTCTTGGAGCTCTTGTTGTTGAATCACACAGGACATTCCAAAGTCAAAGTCAGATGACTGAATCATTAGGAAAAGCTGTTTGGCTCTTTTACCTCATGTGACCTGGGGGAAATAGGCTGCCTTCTAATAAATTTCACCTATGCACTGACCTGCTAGGAGATCGCTTGCTTCTTTTAACGAATGATAACGTGTCTCTCCTGGACAAAGTGCCCAAATGTTTATAGTCTTGTATTAGTGGTCGCATACAACTATGCACATTTAGCCTAGTTTGAAGTTTGTTTGAGAACTTGAGAATTTTCCAGCAGCACAAAGCCTCCTTCAAAACCTGCTTCTCTCTCTTCCAGGACAACCATGATGATCTTGGCATTGCTGACACTTCTGCTGATCACAAATGGTTCTGCAGAGGAAGAAATGGTGAAAACTGTGCTTGGCTTCACTGGACATAATGTACTTTTACCATGTGGCTGTTCCAATGTGCATAAACTGGTATGGCAGAGGGGTGAAAGAGTAGTGAGTTTTTATCAGGAAGGCAAAAGCAGCCCTATAGACCAGGACTACATAGACAGGACTGAAAACTTCCTGAGAATGGAGAAAACAAACTGCTCCCTTAAGATCCTCAACATCTCTTCAGCGGATGAAGGCGCGTACACCTGTCATGCCCTGGTCAGTGTTGCTGAGAACGTCTGGTCGAGGAAGGCACTAACTGTTAATCTAACAGTGTCTGAAGACACTGTAGTCATCCCTACACGGGATTTCATCGTTGGTGTCAAACCTGTCACTGCTGTCTGTATTACTGTTCCCATACTGGCAGTACTACTACTCGCTGTTGCCGTGATTCTAATCCTACTGATCAAAAGACGACATCGGACAAACACGGATCCTGATTTACCGGCACAGCAACCTATGATCAAAATTGTGTGAACTTGCTTGAAAGTATAATGGACTAAATTCTATGTTGTAATACAAGGTCCTTTACAACAACATGGACAATATGAGGCCTTAGCCCCAAAACAAATGTGTTTGATGCGGCCATTACAGAGTGGTGCGTTCAGCGTCGAGACGAACGTCGCAATGTGCAGTCTTCAGTTGTAGCACTGTTACCACTGAATACATTATGAATACACTGTGAATATACTTCTTGTAAGCAGTACAGTTTGTAAGTTGACAAGGTTCTCCTTGTAGGAATTGTCTTTATTCATTCTTTGAAGAATAGATGTAAGAGGTGGGGGACATGCAGTTTATATTTTGCCTATTCCTATTTGATTTGAGACACTGGTGGTCTCATTCTTAAAAAGGCTTTTCAAATCACTGTATTTTATAGCTCATGTATATTGCAATGATTTAAGCGCACATCATGTAAGCGTCTTTATATTTACTCTTGTATGGGTTGTCTTCCTCAGCCTGTGCTGATTTTTATTTATATGGAAGAAATATGGCACTCCCTATGGGATATGTTTGCTTTTTTTTACTCTACTAAATGTCATTTACTTTTAAATGAATTCTGCTTCAAACCTGCCGAGGCA

Function

NR:

description
hypothetical protein cypCar_00030573, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03724620_03726787.mRNA True 2382 mRNA 0.39 4 3723410 3727389

Neighbor

gene id symbol gene type direction distance location
CI01000009_03689901_03697052 GABPA coding upstream 25940 3689330 ~ 3697470 (+)
CI01000009_03680266_03685634 NA coding upstream 37755 3680266 ~ 3685655 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding upstream 62053 3650884 ~ 3661357 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 249996 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 367984 3335503 ~ 3355426 (+)
CI01000009_03760934_03761223 NA coding downstream 33545 3760934 ~ 3761839 (+)
CI01000009_03965885_03980591 NA coding downstream 238267 3965656 ~ 3981149 (+)
CI01000009_04168077_04171609 NA coding downstream 440688 4168077 ~ 4171609 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding downstream 460752 4188141 ~ 4192970 (+)
CI01000009_04193380_04194878 NA coding downstream 465991 4193380 ~ 4194902 (+)
G51694 NA non-coding upstream 24006 3686478 ~ 3699404 (+)
G51699 NA non-coding upstream 37032 3686017 ~ 3686378 (+)
G51678 NA non-coding upstream 47338 3668710 ~ 3676072 (+)
G51685 NA non-coding upstream 77798 3645364 ~ 3645612 (+)
G51700 NA non-coding upstream 78508 3644203 ~ 3644902 (+)
G51751 NA non-coding downstream 15575 3742964 ~ 3743261 (+)
G51752 NA non-coding downstream 15911 3743300 ~ 3743562 (+)
G51755 NA non-coding downstream 22235 3749624 ~ 3749945 (+)
G51764 NA non-coding downstream 41006 3768395 ~ 3768677 (+)
G51765 NA non-coding downstream 45362 3772751 ~ 3773011 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 514426 3202207 ~ 3208984 (+)
G51529 NA other upstream 660823 3062033 ~ 3062587 (+)
G51274 NA other upstream 1372924 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1821984 1897343 ~ 1919516 (+)
G51122 NA other upstream 2041444 1680146 ~ 1681966 (+)
G53388 NA other downstream 1794853 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2132913 5931718 ~ 5943899 (+)
G53651 NA other downstream 2518175 6245564 ~ 6248392 (+)
G56100 NA other downstream 5401911 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6125970 9853929 ~ 9856587 (+)

Expression


Co-expression Network